Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1134 ATGTCATCTTCTTCGATTCCTAACACTTTCTCTCAAGTTCCTCCTCCTCTTCTTCCTCCTCCTTCTTCCGAGCAGCTTTGCTATGTCCATTGTAACATTTGCGACACCGTTTTAGCGGTGAGTGTTCCTTGTAGTAGTTTGTTCAAAAGGGTCACCGTTCGTTGTGGCTATTGCGCCAATCTTCTGCCGGTGAACATGTGTGGTGGCATGCTTCTCCCTTCTTCAAATCAGTTTCATGGCTTTGCTCACTCAACCCCTAACTTTCTCTCTCCCAATACTCACAATTTCTTGGAAGAGATCTCAAATTCAAATCCAAATCCAAATCCAAATTTTCTGATGAACCAAGCAGAAGGAATTGATTTAACCATGGCCACTCGTGTAGCTAATGATCTTCCAAGGCAGCCTCCAAGCATAAATAGACCTCCAGAAAAGAGACAAAGGGTGCCCTCTGCTTACAACCGATTCATCAAGGAGGAGATCCAACGGATTAAGGCTGCCAATCCAGACATATCTCATAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCCCACTTCCCTCACATTCATTTTGGTTCTTCTTCCTGA 588 44.73 MSSSSIPNTFSQVPPPLLPPPSSEQLCYVHCNICDTVLAVSVPCSSLFKRVTVRCGYCANLLPVNMCGGMLLPSSNQFHGFAHSTPNFLSPNTHNFLEEISNSNPNPNPNFLMNQAEGIDLTMATRVANDLPRQPPSINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHFGSSS 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3966563 3970761 - CmPI595203_10g011340.1 Cmu10g1134 426664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1134 195 MobiDBLite consensus disorder prediction 130 149 - -
Cmu10g1134 195 FunFam axial regulator YABBY 5-like 131 189 - -
Cmu10g1134 195 CDD HMG-box_SF 147 183 - -
Cmu10g1134 195 PANTHER PROTEIN YABBY 6-RELATED 23 194 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cmu10g1134 195 SUPERFAMILY HMG-box 133 186 IPR036910 -
Cmu10g1134 195 Gene3D High mobility group box domain 134 188 IPR036910 -
Cmu10g1134 195 Pfam YABBY protein 22 192 IPR006780 GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1183 Cmu-Chr6:22736571 Cmu10g1134 Cmu-Chr10:3966563 2.40E-39 dispersed
Cmu10g1134 Cmu-Chr10:3966563 Cmu11g0298 Cmu-Chr11:3502136 3.20E-39 dispersed
Cmu01g0368 Cmu-Chr1:3862439 Cmu10g1134 Cmu-Chr10:3966563 1.80E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6943 PF04690 YABBY 3.40E-69 CL0114 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1134 K25796 - csv:101219601 338.961