Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1143 ATGCACTGCATTCTTACGCGCCGCCCTACAAAGCCCCGCCACCGCTCACCTCCAGAGACTCCCGCCGTCAAGCGCCTACCGGCCGATTCTTCTGCTACTCGCTCTTGTATTCTGGAGAAAGAGATTCTCGCCATGATAACGTTGGTTAGATTTCGGAATTTATCGTACAAATTCCGAAACGAAACTGATTTAATTAGATGTTTTCATTCCGGAACGAATCTGAAATCCAATTCTCCGGATTCTTCCTCCTCTACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCGTTACCGCCTTACGAAGCTGCTGTTAAGCTCAAGGCTGCAGCAGCTTCCTTCGGCGCGGTTCGGTACATGGTGGCGTATGCGAATCGGCATGCGTTTAGTTATGTGCCGCAAGTTGTTAGAGAGCAGAGAAGAGAGAGGAAGATGCTTAATCAATTGGAGAGTAAGGGTGTGATTAAATCGATCGAGCCATATCTGTGTCGTGTTTGTGGGAGGAATTTTTATACGAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATTGAATCTGCGAAGGGTAGTAGAAGAGTGAAGTTGCTAGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGACTCCCAAAGTGGGATATGGTTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCTGATGTAGAATTGAGAAACGACATGGTTGAGATTATGGATAGGAAAAGAGCAGAGTGTTTGGTTCTTGTATCAGATGATTCTGATTTTGTGGATGTTTTGAAGGAGGCCAGGTTGAGATGTCTGAGGACAGTTGTTGTAGGGGATCTCAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAAAAGGAGGCTGTGTCTGTTGTTGGAAAATGGAAGGATCGGGATGTTTTGAAGAGATTGGAATGGACATACAATCCTCAGTTGGAGAAGAAAGTGTTTGGTTTAGATGATATAGGCGAGGATGAAGATGTTGAAGAAGGTTCTGTTGATGGGGGACTTTGTAAGAATATGCAAAATGATGACAGGGGTGCTTGGTGGGATCTCAGCTCTGATGCTGATACTGAAACTGTTTCCCCACCATCATGGAAATGA 1236 43.85 MHCILTRRPTKPRHRSPPETPAVKRLPADSSATRSCILEKEILAMITLVRFRNLSYKFRNETDLIRCFHSGTNLKSNSPDSSSSTVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGAVRYMVAYANRHAFSYVPQVVREQRRERKMLNQLESKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLTPKVGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEIMDRKRAECLVLVSDDSDFVDVLKEARLRCLRTVVVGDLNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKKVFGLDDIGEDEDVEEGSVDGGLCKNMQNDDRGAWWDLSSDADTETVSPPSWK 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4049985 4051276 - CmPI595203_10g011430.1 Cmu10g1143 426673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1143 411 Gene3D - 77 323 - -
Cmu10g1143 411 SUPERFAMILY beta-beta-alpha zinc fingers 162 188 IPR036236 -
Cmu10g1143 411 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 75 403 - -
Cmu10g1143 411 MobiDBLite consensus disorder prediction 1 27 - -
Cmu10g1143 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 191 IPR013087 -
Cmu10g1143 411 ProSitePatterns Zinc finger C2H2 type domain signature. 165 186 IPR013087 -
Cmu10g1143 411 CDD PIN_LabA-like 173 304 - -
Cmu10g1143 411 Pfam NYN domain 235 315 IPR021139 GO:0004540(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2074 Cmu-Chr5:30386406 Cmu10g1143 Cmu-Chr10:4049985 1.60E-59 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6945 PF01936 NYN 7.00E-10 CL0280 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1143 - - - 0.0