Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1179 ATGGCTGGTCGAATTTTTGAAACCTTGTCCTTTGGTGGGTCTCAACATGGTCAAGGTAATCAATCTTTGCCATTTTCCTCTGGAAATGCTTCATTGAAGATTTTGCTATTGCATGGTTATTTAGACATTTGGGTTAAAGGAGCTAAGAACCTTCCCAATTTGGATATGTTTCACAAGACTCTTGGGGATATGTTTTCAAAAGTGTCCTTTAAGGGTTCCAAAAACAGTGATGGGCAAAAGCCTCAAAAAGTTACTAGTGATCCCTATGTGACTATTTCTGTGTCAAATGCTGTGATTGGAAGAACTTTTGTGATTGATAACAATGAAAATCCTGTTTGGATGCAACATTTTAATGTTCCTGTAGCTCATTATGGTGCTGAGGTGCATTTTGTTGTTAAAGACCATGATGTTGTAGGATCACAAATCATGGGTGTTGTTGCAATTCCTGTGGAAGAAGTGTATTCCGGAGCCATAGTTGATGGAACGTACCCAATCTTAAATAGCAGTAGGAAGCCCTGTAAGCCTGGGGCAGTCTTGAGTTTGTCGATTCAGTATACTCCGGCTGACCAAGCGGCCATTTTTCATGGTGGAATGTATGCGTCTCCTGATCATCAGGGAGTTTCAGGCACATATTTCCCCCTTAGGAAGGGGGGTAAAGTTACGTTGTACCAAGATGCCCATGTTGACGATGGTTGTCTTCCAACAGATTTTAGGCTTCATGGTGGGGTTCAATATGAACATAGGAGCTGCTGGGATGACATCTCTGAATCGATTAGTCAGGCTCGCCGTTTGATCTATATTACAGGCTGGTCCGTGTACCATAGTGTTAAATTGGTTAGAGATGGAACGGCCAAAGAATGTATGTTAGGGGACCTTCTTAAAGCCAAGTCCCAAGAAGGAGTAAGAGTATTGCTTCTTATATGGGACGATCCAACTTCAACTAGTATGTTGGGATATAAGACGGTTGGGATGATGAATACAAATGATGAGGAGACTCGTCGGTTTTTTAAGAACTCATCAGTCCAAGTGATTTTGTGCCCACGATCAGGTGGAAAAGGTCATAGTTGGATTAAAAAACAGGAAGCTGGAACCATCTATACCCACCATCAGAAGACAGTTATTGTAGATGCTGATGCTGGAAATTACAAAAGAAAAATTGTAGCTTTTGTTGGAGGTCTTGATTTATGTTTGGGCCGATATGATACCTCGAGACATCCTCTTTTCCGGACATTGCAAACTACACATGTGGATGACTTCCATAACCCTAATTTTACGGGACCAACTACTGGCTGTCCAAGAGAACCATGGCATGATTTGCACTCCAAGATTGATGGTCCAGCGGCGTATGACGTCCTTGCAAATTTTGAGGAGCGCTGGATGAGAGCTTCAGAGCCTCATGGGCTTAAGAAGCTAAAGAGATTACATGAAGATGTATTGCTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATAACTGATGCTTCTCAACTTTGTAATAATGATCCAGAAGCTTGGAACGTCCAGATTTTTCGCTCAATTGATTCCAACTCCGTAAAAGGATTTCCTGACAAACCAAAAGATGCTATAAGTAGGAACTTAGTATGTGGAAAGAATGTGATGATAGACATGAGTATACATTCAGCATATGTTAGTGCAATTCGAGCTGCTCAACGCTTCATTTACATCGAAAACCAGTACTTCCTTGGGTCATCTTATAATTGGAGTGCTCACAAAGACTTAGGGGCTAATAACTTAATACCAATGGAAATAGCCCTTAAGATTGTGGAGAAAATCAAAGCTAAAGAAAGGTTTTCAGCATATGTGGTTATTCCCATGTGGCCAGAAGGTGCTCCTACAAGCACTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTATGAAATGATATACAAGGCGTTAGAGGAGGTTGGACTTCATAAAACATATGAGCCTCAAGACTACTTAAATTTCTTTTGCCTTGGAAACCGTGAGGTGCTCGATGTCAGAGACGGTGTTGAAGCCGGGAATGGAGAAAAGAATGCTCAATCACTTGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTACGTCTTATTGGGATCGGCAAATATCAATCAACGGTCCCTTGAAGGTACCAGAGACACTGAAATAGCAATGGGCGCATATCAGCCCCGTCATACATGGTCATCGAGAAAACGCTCGAGCCCACGTGGTCAGGTCTATGGATATAGAATGTCTTTATGGGCAGAGCACACAGGAACAATGGAGGAATGTTTTGAAAGACCAGAGAGTATTGAATGTGTAAGAAGAATCAGGTCATTGGGTGAGAGAAATTGGAGGCAATATGCAGCTGAGGAAGTGAGTGAAATGAGAAGTCATCTTCTTAAATATCCATTGCAAGTTGATCCAACTGGTAAGGTGACCCATCTTCCTGGTTCTGAAACCTTCCCTGACCTTGGTGGCAACATATTAGGAACATTCACAGTCATACAAGAAAATCTTACAATTTGA 2556 41.35 MAGRIFETLSFGGSQHGQGNQSLPFSSGNASLKILLLHGYLDIWVKGAKNLPNLDMFHKTLGDMFSKVSFKGSKNSDGQKPQKVTSDPYVTISVSNAVIGRTFVIDNNENPVWMQHFNVPVAHYGAEVHFVVKDHDVVGSQIMGVVAIPVEEVYSGAIVDGTYPILNSSRKPCKPGAVLSLSIQYTPADQAAIFHGGMYASPDHQGVSGTYFPLRKGGKVTLYQDAHVDDGCLPTDFRLHGGVQYEHRSCWDDISESISQARRLIYITGWSVYHSVKLVRDGTAKECMLGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTNDEETRRFFKNSSVQVILCPRSGGKGHSWIKKQEAGTIYTHHQKTVIVDADAGNYKRKIVAFVGGLDLCLGRYDTSRHPLFRTLQTTHVDDFHNPNFTGPTTGCPREPWHDLHSKIDGPAAYDVLANFEERWMRASEPHGLKKLKRLHEDVLLKIERIPEILGITDASQLCNNDPEAWNVQIFRSIDSNSVKGFPDKPKDAISRNLVCGKNVMIDMSIHSAYVSAIRAAQRFIYIENQYFLGSSYNWSAHKDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGAPTSTPIQRILFWQSRTMQMMYEMIYKALEEVGLHKTYEPQDYLNFFCLGNREVLDVRDGVEAGNGEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVLLGSANINQRSLEGTRDTEIAMGAYQPRHTWSSRKRSSPRGQVYGYRMSLWAEHTGTMEECFERPESIECVRRIRSLGERNWRQYAAEEVSEMRSHLLKYPLQVDPTGKVTHLPGSETFPDLGGNILGTFTVIQENLTI 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4447374 4453293 + CmPI595203_10g011790.1 Cmu10g1179 426709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1179 851 SMART C2_3c 40 162 IPR000008 -
Cmu10g1179 851 Pfam Phospholipase D Active site motif 698 723 IPR001736 GO:0003824(InterPro)
Cmu10g1179 851 Pfam Phospholipase D Active site motif 366 396 IPR001736 GO:0003824(InterPro)
Cmu10g1179 851 SUPERFAMILY Phospholipase D/nuclease 206 463 - -
Cmu10g1179 851 SUPERFAMILY Phospholipase D/nuclease 533 783 - -
Cmu10g1179 851 FunFam Phospholipase D 512 742 - -
Cmu10g1179 851 Gene3D Endonuclease Chain A 239 478 - -
Cmu10g1179 851 ProSiteProfiles C2 domain profile. 15 163 IPR000008 -
Cmu10g1179 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 696 723 IPR001736 GO:0003824(InterPro)
Cmu10g1179 851 Gene3D Endonuclease Chain A 507 759 - -
Cmu10g1179 851 CDD C2_plant_PLD 35 186 - -
Cmu10g1179 851 FunFam Phospholipase D delta 241 478 - -
Cmu10g1179 851 Pfam Phospholipase D C terminal 771 841 IPR024632 -
Cmu10g1179 851 PIRSF PLD_plant 26 851 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cmu10g1179 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 364 399 IPR001736 GO:0003824(InterPro)
Cmu10g1179 851 Pfam C2 domain 39 164 IPR000008 -
Cmu10g1179 851 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 187 IPR035892 -
Cmu10g1179 851 Gene3D C2 domain 26 186 IPR035892 -
Cmu10g1179 851 SMART pld_4 696 723 IPR001736 GO:0003824(InterPro)
Cmu10g1179 851 SMART pld_4 364 399 IPR001736 GO:0003824(InterPro)
Cmu10g1179 851 PANTHER PHOSPHOLIPASE D 36 841 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1519 Cmu-Chr2:28907060 Cmu10g1179 Cmu-Chr10:4447374 3.40E-32 dispersed
Cmu06g0019 Cmu-Chr6:209453 Cmu10g1179 Cmu-Chr10:4447374 0.00E+00 dispersed
Cmu07g1245 Cmu-Chr7:27763065 Cmu10g1179 Cmu-Chr10:4447374 4.00E-197 dispersed
Cmu08g1270 Cmu-Chr8:25028518 Cmu10g1179 Cmu-Chr10:4447374 8.80E-200 dispersed
Cmu09g0265 Cmu-Chr9:2664199 Cmu10g1179 Cmu-Chr10:4447374 3.00E-200 dispersed
Cmu10g1179 Cmu-Chr10:4447374 Cmu08g1343 Cmu-Chr8:25651705 1.70E-249 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1179 K01115 - csv:101208016 1684.08