Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1183 ATGGCGTCTTCTTCCGGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAGGGTCGTTGATATTGTGGGCAATGAAGATGCAGTTCGTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCTCCAGGAACGGGGAAGACAACCAGTATTTTAGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAGTTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGCGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATTGTTCGTGAGACTGCAAAAGCGCCATGA 996 44.78 MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4503770 4511820 - CmPI595203_10g011830.1 Cmu10g1183 426713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1183 331 Gene3D - 235 327 - -
Cmu10g1183 331 FunFam Replication factor C subunit 4 7 170 - -
Cmu10g1183 331 FunFam replication factor C subunit 2 235 327 - -
Cmu10g1183 331 Pfam Replication factor C C-terminal domain 235 320 IPR013748 -
Cmu10g1183 331 Pfam ATPase family associated with various cellular activities (AAA) 49 167 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu10g1183 331 SMART AAA_5 45 177 IPR003593 GO:0016887(InterPro)
Cmu10g1183 331 Gene3D - 7 170 IPR027417 -
Cmu10g1183 331 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 13 324 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cmu10g1183 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 233 IPR027417 -
Cmu10g1183 331 CDD AAA 28 165 - -
Cmu10g1183 331 Gene3D - 171 234 - -
Cmu10g1183 331 CDD HLD_clamp_RFC 170 232 IPR047854 -
Cmu10g1183 331 FunFam Replication factor C subunit 4 171 234 - -
Cmu10g1183 331 SUPERFAMILY post-AAA+ oligomerization domain-like 234 325 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0537 Cmu-Chr8:17332643 Cmu10g1183 Cmu-Chr10:4503770 8.50E-54 dispersed
Cmu10g1183 Cmu-Chr10:4503770 Cmu11g1591 Cmu-Chr11:28221108 2.10E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1183 K10755 - csv:101208984 634.795