Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1184 ATGGCATCTTCAAGGTCCCCGAATGGATCTTCTGATGATATCCTCGATACCTCCCCTTTGATGGGGAATTCGAACCGGTCGCCGGACGATACGCATTCGGGTCGGAGATTTGTGCAGAGGCAAAGTCTACGTCAGGCGGCGAGGTTTCTTAGGCAGGCCAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTTATTCTTGACATCGTCTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTCAGCCGCAACGAGTCTCCTTCAATGCCTTTGAGACTGTGGATCGTGGGGTATGCGTTTCAATGCATTCTCCATATGGTGTGTGTTTGTGTTGAGTATCGTCGCCGCCGGCAGCTACGATATTCGACCTTCAATTCAATGGACGAGGGAAATTCTGCACGCGGGATTTCGGGTTTGGGCTCGAGGGCAAACTCGAGTCATTATGTATCATTGGCTCAATTGGATGATAACGATAGCAGTGTAGCAAAGCACCTTGAATCTGCAAATACCATGTTCTCCTTCATCTGGTGGATTATTGGATTCTATTGGGTATCTGCAGGAGGACAATCTTTAGCACACGTCTCTCCTCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGAAGGTGCAACCAAAGAAGATGTTGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGACGACGCCGAGAAATTCTCCACTGATGTACAGGAACCTCTTGGTGGGATAATGACCGAGTGTGATACAGATTCACCCATTGAACGCGCCCTCTCGCAGGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCATATGAGGATGGTGTCGAGCTACGAGAGCTCCCATGTGGTCACCACTTCCACTGTGCCTGCGTCGATAAGTGGCTGTATATTAACGCCACCTGTAAGTTGTGTGTAGTTGTGAAAGAGATCAATCAGCAAACTCAGTATAGGGCCCTTTCTTTTGCTGCAGTTGCTATTGTTGTTGTAGTGAATATTATTCTTTGCTGTAGTTCTTGCTCTGCTCGGGTTGCTCGTGTAAATGGCGATATGAAAGGTTCTCTGTAA 1257 47.33 MASSRSPNGSSDDILDTSPLMGNSNRSPDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRNESPSMPLRLWIVGYAFQCILHMVCVCVEYRRRRQLRYSTFNSMDEGNSARGISGLGSRANSSHYVSLAQLDDNDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDDAEKFSTDVQEPLGGIMTECDTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCKLCVVVKEINQQTQYRALSFAAVAIVVVVNIILCCSSCSARVARVNGDMKGSL 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4516008 4521368 + CmPI595203_10g011840.1 Cmu10g1184 426714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1184 418 Pfam Ring finger domain 327 368 IPR001841 -
Cmu10g1184 418 PANTHER TARGET OF ERK KINASE MPK-1 43 368 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cmu10g1184 418 SUPERFAMILY RING/U-box 319 371 - -
Cmu10g1184 418 MobiDBLite consensus disorder prediction 1 36 - -
Cmu10g1184 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 377 IPR013083 -
Cmu10g1184 418 SMART ring_2 328 368 IPR001841 -
Cmu10g1184 418 MobiDBLite consensus disorder prediction 1 28 - -
Cmu10g1184 418 ProSiteProfiles Zinc finger RING-type profile. 328 368 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0631 Cmu-Chr1:6988729 Cmu10g1184 Cmu-Chr10:4516008 1.10E-76 dispersed
Cmu05g0199 Cmu-Chr5:1678462 Cmu10g1184 Cmu-Chr10:4516008 3.70E-122 dispersed
Cmu10g1184 Cmu-Chr10:4516008 Cmu10g2397 Cmu-Chr10:30423349 5.90E-67 dispersed
Cmu10g1184 Cmu-Chr10:4516008 Cmu10g2819 Cmu-Chr10:34731228 1.40E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1184 - - - 0.0