Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1189 ATGCTTATGGACCCTTCTTTCAATTCCTCTCACCAACAACAACAACAAGAACAACAAGAACAAGATCAAGAAATTACCACTTCCAATCATTCTTTCCAAATGCGTCAATTACTAATCCGTTGTGCTCATTTCATTTCTCAATCTGATTTCCTTTCAGCTCATCATCTTCTTTCAATTCTCTCTTCAAATTCCTCTCCTTATGGTGATTCCACTGAAAGATTACTTCATTACTTCTCTTCTTCCCTTTCTCATCGCCTCCCTTCAAATTCTTCTTTTGTTCATCATCATCATCATCATCATCATCATCAAGATAATGATGATGAGAGCAGGATTCAATCTTGTTACTTATCATTGAATCAAATCACACCCTTTATTAGATTTACTCATTTGACTGCAAATCAAGCCATTTTGGAAGGTATTGAAGAAAGTGGGATGATTCATGTTTTGGATTTTGATATTATGCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGATCGTTTTCCTTCTCCTATGCTTCGTATTACTGCTACTGGTCTTGATCTTAACTTCCTTCATAAGACTGGTGATAGGCTTTCTAAATTTGCTCAATCACTTGGTTTGAGGTTTCAGTTTCATCCTCTTCTTCTTCTTCATGATCGCGATCATCACCGTGTTATCCCCGCCGCTCTCACGCTCTTCCCCGACGAAGCTCTCGCCGTCAACTGTGTTCTCTACTTGCACAGGCTAATGAAGGAGGATGTTCGAGTATTGCTTCATAAAATCAAGGCTTTGAATCCAAAAGTGGTGACTATAGCTGAAAAGGAAGCAAATTTCAACCACCCATTATTCATGCAAAGATTTATAGAGGCATTGAATCATTACTCTTTAATATTTGATTCATTAGAAGCAACTTTGCCTCCAAATAGTAGGGAGAGATTGGCAGTGGAGCAAGTTTGGTTTGGGAGGGAAATAGAAGACGTCGTTTCAGGAGAAGGGAATAAGAAGAGAAGGCAACACTATGAAAGGTATGAATCATGGGAAATAATGCTTAAAAGTTTGGGATTTTCTAATATTCCTTTAAGCCCTTTTGCTCTTTCACAAGCCAAACTTCTTCTTAGACTTCATTACCCTTCTGAAGGTTACCATCTTCAAATCCTTCATGATTCCCTTTTCCTTGGTTGGCAAAATCAACCCCTTTTTTCAGTCTCTTCATGGCATTGA 1209 38.54 MLMDPSFNSSHQQQQQEQQEQDQEITTSNHSFQMRQLLIRCAHFISQSDFLSAHHLLSILSSNSSPYGDSTERLLHYFSSSLSHRLPSNSSFVHHHHHHHHHQDNDDESRIQSCYLSLNQITPFIRFTHLTANQAILEGIEESGMIHVLDFDIMHGVQWPPLMQALADRFPSPMLRITATGLDLNFLHKTGDRLSKFAQSLGLRFQFHPLLLLHDRDHHRVIPAALTLFPDEALAVNCVLYLHRLMKEDVRVLLHKIKALNPKVVTIAEKEANFNHPLFMQRFIEALNHYSLIFDSLEATLPPNSRERLAVEQVWFGREIEDVVSGEGNKKRRQHYERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQILHDSLFLGWQNQPLFSVSSWH 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4618540 4620197 - CmPI595203_10g011890.1 Cmu10g1189 426719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1189 402 Pfam GRAS domain family 34 401 IPR005202 -
Cmu10g1189 402 MobiDBLite consensus disorder prediction 1 26 - -
Cmu10g1189 402 ProSiteProfiles GRAS family profile. 25 402 IPR005202 -
Cmu10g1189 402 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 401 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0010014(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1189 Cmu-Chr10:4618540 Cmu11g0954 Cmu-Chr11:13186053 1.80E-60 dispersed
Cmu10g1189 Cmu-Chr10:4618540 Cmu10g2833 Cmu-Chr10:34841085 5.60E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6946 PF03514 GRAS 1.40E-118 CL0063 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1189 K27746 - csv:101213853 677.937