Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1201 ATGGCCTCCACCACCTCCTCCAACAGACATGATCACTACAAAGGAATCCGCTGCCGCAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCACGTAAGACTACCCGAATATGGCTCGGTACCTACCCTACGCCGGAGATGGCTGCTGCTGCCTACGATGTCGCCGCACTCGCACTCAAGGGTTGCAATGCTGTTCTCAACTTCCCGGAATTGATTGCCTCCTACCCGGTTCCGGCTTCCTCGTCCCCAGCCGATATCCGATTTTCTGCCGCTGCTGCTGCCGCGTTGAAAAAAGTTGATGATCAAGGACAAAACACTGACCAAAGCTTTCACCACCAGTCTCTGCCAACCAATGAGTTTGTCGACGAAGAGGCGCTGTTCGGAATGCCGAATCTGCTTGTTGACATGGCCGAGGGAATGCTGTTGTCCCCACCACGAATGACCTCGTCGCCGTCCCGACATGACTCATGGAACTCAAGTGGAGATGGAAATCTTTGGAGCTACCACTAG 507 54.64 MASTTSSNRHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPELIASYPVPASSSPADIRFSAAAAAALKKVDDQGQNTDQSFHHQSLPTNEFVDEEALFGMPNLLVDMAEGMLLSPPRMTSSPSRHDSWNSSGDGNLWSYH 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4778255 4778761 - CmPI595203_10g012010.1 Cmu10g1201 426731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1201 168 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677(InterPro)
Cmu10g1201 168 SMART rav1_2 12 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1201 168 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 167 IPR045277 GO:0003700(InterPro)
Cmu10g1201 168 Pfam AP2 domain 12 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1201 168 CDD AP2 12 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1201 168 FunFam Ethylene-responsive transcription factor 2 11 69 - -
Cmu10g1201 168 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1201 168 Gene3D AP2/ERF domain 11 69 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0879 Cmu-Chr5:7995791 Cmu10g1201 Cmu-Chr10:4778255 9.80E-41 dispersed
Cmu10g1201 Cmu-Chr10:4778255 Cmu10g2651 Cmu-Chr10:33322369 3.70E-36 dispersed
Cmu10g1201 Cmu-Chr10:4778255 Cmu01g0298 Cmu-Chr1:3042168 5.30E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6947 PF00847 AP2 5.50E-11 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1201 - - - 0.0