Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1207 ATGTTTCCTAACTTATTTGGCTCGTTTGATGAGTGCAGGGAAGAGTGGTCAGTTATGGATTGTTGGGAATGCATGACGAACAAGCTTGGGAGGGGTGGTCTTCTTTTGGGGATTAGTGTGATTGAGATTCAAGAGTCGTACGAGTCGGATAGGTGGTCCCCTCCTCCAGTTGGTTGTTGGAAGCCCAATGTTGATGTTGATACATCGTTGAGTAAAGAGAAAAAGTTAAGAGCAATTGATACTTTCATCAGCGTAACCGGAGCCTCCGAAGCCATCGCCGTTCAGAGCCTTGAGGCACATGGTGCTGATCTCAATGCTGCTGTGAATGCATATTTCAATGAAGGAGATAGAAGTTCGTCTGTGAACGCACGGCAAACCTCTGTTTCTGGTGAATATGATTTCATGGACATTGATGATCCAGTTGAAGTTGAACCCCAAGGTCCTCCTCGGTCTCTTCTATCTACAGCTAGAGAGATAATGAATCCATTTTCATTACTTGATCAAAATCTCCGCCAGGGGTTCTTTGACCGCAGCTCTGATTTTACAAGTTCTGCTCCTGTTGTTACTCATCCAAGAGAGTTGAGGGAGATTCCCATAGAATTTAGAGATGGTAATCGGCCGTCTGGCCAATCTGGCCATGAGCCAACAATTGAGGATGTCACTGGGACTCTAGATGCCCCTGGTCCAGAGGTTCATGGGACTGTACTAATTGATGATACAGAAGACGAAGAACCTCCAGTTACTTCTATAGCACACGCACCAGATTTAGAGCATCGGGCTGTTGCGAGTAACATATCTCGTGGCAGAAATGCTATAACTGGTGCATTTGATAGTGATGAGTTTCAGGACAGAAATGATATTGAAGAAGAAATGATTCGTGCTGCAATTGAGGCTTCAAAGAAGGATGTTGGGCAAGCTTATCCAAATGATCCCATAACTTCGCACACTGATTTAAGCAACCTTAGAACTCAAGAACATCTTTCTCACTTGAATAATTTTGAAGTTTCGCCTGCAGCTTCGTCTATCAAGCCAGAGGAAGATATCCCTCAGCGAGGGGAGAGCATTGGAGGATCAAAAATAGAAGCTTCTAAGTTAACTGAGGTGGACGTGGAGCTGAGGAAAGTCAGAGCACTAAATGGAAGGATGGAAACAGGAAGCACATCTGCTCAAGACGAAGTTGAAGACCTAGAGGAAGATAATTTAATAAGGCATCGGTCTAAACGCAAGTCCACTGGCTATGTGGAGCCTGCAAAGGGGGTTGAAGTAGACGTAAACCTTGCATCTAGTCCCAAGCAATCCGATACTAGTAACAATCCACAGCACAATGGGAATATGTTTCCTTCTGATGAGTGGGGCGGAATTTCTTCAGAGGAGCATGACGAAGCAGTCATGCTTGAGGCTGCTATGTTTGGTGGAGGTTCTGAAGGAAGTTCATACCATTTTCCATCTGCACCCCATGAATTCATGAGAAATCAAGGTTCATACATGCAGCCAGCTCCTCGTCCTCCTTCTCCCTCTTTAGTAGCTCAGCGTTTGATAAGGGAACAACAGGATGATGAGTATCTCGCAGCCTTACAAGCTGACAGAGAAAAAGAACTAAAGGCTATGGAAGAAGCTGCAGCTGTTCGTGAAAAAGAAAGACAAAGAGAGGAAGAATCCCGTCAGAAATTGGATGCTGAGAAGGAACTTGAAAGACACTTGGCAGAAATAGAAGCTTCTCTTCCAAGTGAACCAAGAACAGATGATGAGAATGCTGTGACACTATTAGTGCGCATGCCAGATGGCAGTCGCCGCGGTCGTCGATTTCTCAAAACTGATAAGTTACAGTGTCTCTTGCACTTCATTGATATTGGTAGAGTTGTCAAGCCTGGCTCCTACAGATTGGTGAGGCCATATCCTCGAAAAGCTTTTGGAGATGGGGAGGGTTCATTAACGTTGAATGAACTTGGACTCAACAGCAAACAAGAAGCTTTGTATCTGGAGTTGATTTAA 1992 44.73 MFPNLFGSFDECREEWSVMDCWECMTNKLGRGGLLLGISVIEIQESYESDRWSPPPVGCWKPNVDVDTSLSKEKKLRAIDTFISVTGASEAIAVQSLEAHGADLNAAVNAYFNEGDRSSSVNARQTSVSGEYDFMDIDDPVEVEPQGPPRSLLSTAREIMNPFSLLDQNLRQGFFDRSSDFTSSAPVVTHPRELREIPIEFRDGNRPSGQSGHEPTIEDVTGTLDAPGPEVHGTVLIDDTEDEEPPVTSIAHAPDLEHRAVASNISRGRNAITGAFDSDEFQDRNDIEEEMIRAAIEASKKDVGQAYPNDPITSHTDLSNLRTQEHLSHLNNFEVSPAASSIKPEEDIPQRGESIGGSKIEASKLTEVDVELRKVRALNGRMETGSTSAQDEVEDLEEDNLIRHRSKRKSTGYVEPAKGVEVDVNLASSPKQSDTSNNPQHNGNMFPSDEWGGISSEEHDEAVMLEAAMFGGGSEGSSYHFPSAPHEFMRNQGSYMQPAPRPPSPSLVAQRLIREQQDDEYLAALQADREKELKAMEEAAAVREKERQREEESRQKLDAEKELERHLAEIEASLPSEPRTDDENAVTLLVRMPDGSRRGRRFLKTDKLQCLLHFIDIGRVVKPGSYRLVRPYPRKAFGDGEGSLTLNELGLNSKQEALYLELI 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4841749 4847773 - CmPI595203_10g012070.1 Cmu10g1207 426737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1207 663 Gene3D - 74 115 - -
Cmu10g1207 663 CDD UBX 587 661 - -
Cmu10g1207 663 Pfam UBA-like domain 78 117 - -
Cmu10g1207 663 PANTHER FAS-ASSOCIATED PROTEIN 79 661 IPR050730 GO:0005783(PANTHER)|GO:0030433(PANTHER)|GO:0043130(PANTHER)
Cmu10g1207 663 ProSiteProfiles UBX domain profile. 581 659 IPR001012 GO:0005515(InterPro)
Cmu10g1207 663 MobiDBLite consensus disorder prediction 538 561 - -
Cmu10g1207 663 Pfam UBX domain 582 661 IPR001012 GO:0005515(InterPro)
Cmu10g1207 663 CDD UBA_Ubx1_like 78 112 - -
Cmu10g1207 663 SUPERFAMILY UBA-like 76 114 IPR009060 GO:0005515(InterPro)
Cmu10g1207 663 SMART ubx_3 578 662 IPR001012 GO:0005515(InterPro)
Cmu10g1207 663 Gene3D - 582 662 - -
Cmu10g1207 663 MobiDBLite consensus disorder prediction 336 360 - -
Cmu10g1207 663 SUPERFAMILY Ubiquitin-like 544 653 IPR029071 -
Cmu10g1207 663 Coils Coil 522 569 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1207 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0203 Cmu-Chr5:1709370 Cmu10g1207 Cmu-Chr10:4841749 4.90E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g368 Blo02g01097 Blo03g00196 . . . . . . . . . . . . . . . Bhi11g00393 . . . Hepe06g1233 . . Cla10g00354 Cam10g0366 Cec10g0384 Cco10g0379 Clacu10g0370 Cmu10g1207 Cre10g0622 . . . . . . . . . . . . . . . . . . . Cma06g00707 . . Car16g00956 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44