Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1215 ATGCTTAGATCTTCACTGGATCTTGGGATCCGACCCCATTTGGGAGGATTTGTCGTTCGAGCTCGGGATCAAGTAGTAATGGGGAGGACTGATGATAATGTTGCTATTATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAGACCTGCCATGGACACTACCAGCAGTGATCATAAAACTGAAGAACTCTTTCTCAGGCCTCGAGAACATACGGTATCTGAAAATGCCGTTGCAAGAGGCGGGATCCCGGGTGCCAATTCTGGTGACCGAGCAACAGAGTTCGGTACATTCTCGGAGCAGAAATTTCGTGGGGGACTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATCAGATCAACAGATCACTCTTTGAATTCAGAAGTAAAGTCTCCTTACTTGACAATACCACCTGGTCTCAGCCCAACTACATTGCTAGATTCACCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGAAAGTTCCAATTTTTAGCAAATGTTAGTAACAATCGGAGCTCGACGATGATGTCGGAGGCCAACAACAATCCGTTCGATGATAACAGTACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTATTCTCAGTGCAGCAGCAAGCAAAACAGCTTCTGCTACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATCTTGTAGAACCATCTCTGTCTTTACCCCAAAATCGAATTGGTCACCATCCTCAAGTGGGACTCTCTACATCGTACATGGAGAAGGATGATGTGGGTAAGACTGTGTCGGATGATCAAAGACCTTTTGATTCTCTGTGTGGTGGTGGTGAACATTCTCCGCCACTCGATGAGCAACCGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTAGTGGTTGCGGTGCGCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGTGAGTATCCTCGGAGTTATTACAAGTGCACACATCCAAATTGTCAGGTCAAGAAGAAAGTTGAACGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCACCAAATCGACGAGTAGCAATTGGATCTTCTGACTCCCATATCAATATGCAACCAGACATCCCTGCACAAGCAGCAGGCCAACAGAGTGCTGAAGTTTCAGTTTGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGATGCAAGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATAGCAGTCATATTGAAACAGCTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGATATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCCTATGTAACAGAGATGAGTGGGGCCACTAGAGCTATCCGTGAGCCGAGAGTTGTCGTTCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGTTGGCGCAAATATGGACAGAAGGTTGTGAAAGGAAACCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCTGGCTGCACAGTGAGGAAGCATGTTGAGCGGGCGTCACATGACCTGAAGTCCGTGATAACCACATATGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTGGTACATCCAGTCCAGTAACGGGTCAAAACTCGACCGCAGCAATGCAAACTCATGTTCACAGGCCAGGGCCACCCCAGCCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCTTTTGGCTTTGCTGGAAGACAGCAGATGGGCACTGCTTTTGGAATGAACCAACCTGGACTGGGAAATCTGACCATGGCAGCTGTTGGCCAAGCCAAGCTTCCTGTTATGCCAATGCATCCTTACTTAGCACAAGCACACCATGTTCATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2295 46.36 MLRSSLDLGIRPHLGGFVVRARDQVVMGRTDDNVAIIGDWVPPSPSPRTFFSAMQMLGEDIGSRPAMDTTSSDHKTEELFLRPREHTVSENAVARGGIPGANSGDRATEFGTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFQFLANVSNNRSSTMMSEANNNPFDDNSTSFAFRPSVESGSSFILSAAASKTASATILPQSCPRIEVPVPRSENSFQSHLVEPSLSLPQNRIGHHPQVGLSTSYMEKDDVGKTVSDDQRPFDSLCGGGEHSPPLDEQPDEGEQRGSGDSMAGSGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRVAIGSSDSHINMQPDIPAQAAGQQSAEVSVWEDSQKGIPTGAPDWMQENLEVTSSASLGPEYGNQPNPLQAQNSSHIETAEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSTAAMQTHVHRPGPPQPQNTIPRFERPAFGFAGRQQMGTAFGMNQPGLGNLTMAAVGQAKLPVMPMHPYLAQAHHVHEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4932714 4937449 - CmPI595203_10g012150.1 Cmu10g1215 426745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1215 764 SMART WRKY_cls 348 406 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1215 764 SMART WRKY_cls 564 623 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1215 764 MobiDBLite consensus disorder prediction 618 644 - -
Cmu10g1215 764 FunFam WRKY transcription factor 33 551 617 - -
Cmu10g1215 764 SUPERFAMILY WRKY DNA-binding domain 556 624 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1215 764 ProSiteProfiles WRKY domain profile. 349 407 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1215 764 MobiDBLite consensus disorder prediction 626 644 - -
Cmu10g1215 764 Pfam WRKY DNA -binding domain 349 405 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1215 764 Pfam WRKY DNA -binding domain 565 622 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1215 764 SUPERFAMILY WRKY DNA-binding domain 347 407 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1215 764 MobiDBLite consensus disorder prediction 276 355 - -
Cmu10g1215 764 Gene3D WRKY domain 551 617 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1215 764 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 214 644 IPR044810 GO:0003700(InterPro)
Cmu10g1215 764 FunFam WRKY transcription factor 339 408 - -
Cmu10g1215 764 ProSiteProfiles WRKY domain profile. 559 624 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1215 764 MobiDBLite consensus disorder prediction 499 531 - -
Cmu10g1215 764 Gene3D WRKY domain 342 408 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0273 Cmu-Chr2:2505931 Cmu10g1215 Cmu-Chr10:4932714 7.00E-59 dispersed
Cmu03g1634 Cmu-Chr3:19049389 Cmu10g1215 Cmu-Chr10:4932714 4.10E-88 dispersed
Cmu05g2447 Cmu-Chr5:33516691 Cmu10g1215 Cmu-Chr10:4932714 2.10E-71 dispersed
Cmu10g1215 Cmu-Chr10:4932714 Cmu11g0463 Cmu-Chr11:5135642 4.40E-68 dispersed
Cmu10g1215 Cmu-Chr10:4932714 Cmu10g1270 Cmu-Chr10:5592451 2.60E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6951 PF03106 WRKY 3.10E-24 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1215 K18835 - csv:101207853 1293.49