Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1232 ATGCGAAAGTCCACCATTTCAAGAAAGAAAAATCCTTCTAGTTGTTCTCCTCTTGCTCCTAACACCGATCGACGACAACCGAAGCTTCCCTTTTGGTTTCTTCCACTGCAGGCTAAGTCTTCGCGAAAATTTTGCGACCCTGAGTTTCAAGTTGCTAAAAGAATGTTGGAGAGTTTTGCTTACAAGAGCGTGAAGATTGTAATCTTCACAAATAAACTCAACTTCCTGATGCCTTTTGGGCCTCTAGCAATTCTTGTGGATAAGTTGGCTGGACACAATAGTTGGGTCTTCTTCCTGAGTCTATTGGGTATCATACCATTGGCTGAGCGGTTAGGTTATGCCACAGAGCAGCTAGCTTTTTACACTGGTCCTACAGCTGGTGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAGCTGATTATATCAATTTTTGCCCTGAGAAGTCAAATGATACGTGTTGTTCAGCTATCATTACTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTATAAAAAGGAACAGACCTTTAACAAGGCAACTGCTGTTGTCAACTCAGGGTTGTTATTAATGGCTGTCATGGGCCTGCTTTTTCCCGCTCTTCTCCACTACACCCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTTTCGAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGTCAGACGAATCTTTATTCTTCCGTTTATGAGGAAGAAATTCAGAGTGAAGAAAGCTCAGATGAAGACGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGCCTGGATCTCTGTTCTATCAAAATATCTGGTCGATGCAATTGAAATTGCATCTGAATCATTGAAAATCCCAGTGTCGTTTATTAGTGTTGTACTGCTTCCAATTGTGGGGAATGCCGCTGAGCATGCAAGTGCAATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATTGGATCATCAACCCAGATATCTATGTTTGGGGTTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGGCAACCAATGGACTTAAACTTCCAACTCTTCGAGACGGCAACACTTTTTATAACTGTAATTGTCGTAGCTTTCTTGCTCCAGGAAGGAACTTCAAATTACTTCAAGGGACTGATGCTCATCCTTTGTTATCTGATAGTTGCTGCTAGTTTTTTCGTGCACGTCGATCCTCCTTTACCCGAGAATAAACTGGGGAGTCTGAAAGCGTAG 1335 42.25 MRKSTISRKKNPSSCSPLAPNTDRRQPKLPFWFLPLQAKSSRKFCDPEFQVAKRMLESFAYKSVKIVIFTNKLNFLMPFGPLAILVDKLAGHNSWVFFLSLLGIIPLAERLGYATEQLAFYTGPTAGGLLNATFGNATELIISIFALRSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKATAVVNSGLLLMAVMGLLFPALLHYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQTNLYSSVYEEEIQSEESSDEDEAPEISKWESVIWLSILTAWISVLSKYLVDAIEIASESLKIPVSFISVVLLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGVPFCVVTGWIMGQPMDLNFQLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLPENKLGSLKA 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5181265 5187506 + CmPI595203_10g012320.1 Cmu10g1232 426762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1232 444 FunFam Vacuolar cation/proton exchanger 124 263 - -
Cmu10g1232 444 Gene3D - 124 266 IPR044880 -
Cmu10g1232 444 Gene3D - 270 428 IPR044880 -
Cmu10g1232 444 NCBIfam calcium/proton exchanger 77 427 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cmu10g1232 444 FunFam Vacuolar cation/proton exchanger 272 428 - -
Cmu10g1232 444 MobiDBLite consensus disorder prediction 1 23 - -
Cmu10g1232 444 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 51 432 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cmu10g1232 444 Pfam Sodium/calcium exchanger protein 284 426 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g1232 444 Pfam Sodium/calcium exchanger protein 95 250 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1051 Cmu-Chr2:20128803 Cmu10g1232 Cmu-Chr10:5181265 3.50E-158 dispersed
Cmu03g0699 Cmu-Chr3:1207958 Cmu10g1232 Cmu-Chr10:5181265 1.20E-85 dispersed
Cmu07g1399 Cmu-Chr7:29250063 Cmu10g1232 Cmu-Chr10:5181265 1.50E-152 dispersed
Cmu10g1232 Cmu-Chr10:5181265 Cmu10g2909 Cmu-Chr10:35452782 3.30E-92 dispersed
Cmu10g1232 Cmu-Chr10:5181265 Cmu04g0749 Cmu-Chr4:21996549 3.50E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1232 K07300 - csv:101205761 644.425