Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1235 ATGGCTTCCACGGCAGAGGACACAACAATCACTTCTTCCAACGATGCCGCCACCGCCGAAGAACAACACTATGCTTATGCTATGCAACTGGCTACCTTATCGGTGGTGCCGATGACACTCCAAGCAGCCTTCGAGCTCGGCGTGTTTGAGATCTTGGCCAAGGCCGGGAACGGGGCCGAGCTCTCTCCGACAGAGATAGCAGCCGAGATAACCACGAAAAACCCCGAAGCGGCGGCGAAGATTGATCGGATGTTGAGGCTTCTAGCGAGCCACTCGGTGGTGGGATGCTCTTTGGCCTTTGATGAAGATGGGAATGTGCAAAGAGTTTATAGCCTTACGCCGGTTTCAAAGTATTATGTTCATAAAATCCTTCTCCATACCTGGAGTGAGCTGAAGAATGCAATTATTGGAGGAGGAGGTGTTTTCAGTAGGGCTTATGGGGGAGTTCATGCCTTTGAATACCTTGGTTTGGATCCAAGATTTAACCAAATTTTCAACACTGCAATGATAAATCACACCACTATGCCCATCAAAAAAATTGTTGAATCCTACAAAGGCTTTGCAAACATCAAGCAACTAGTTGATGTTGGTGGTGGCCTTGGGGTCACCCTTCAAGTCATCACTTCTACCTATCCTTCTATTAAAGCCATCAACTTCGACTTACCTCATGTCATTCGTGATGCCCCTCCCTACTCTGGTGTAGAACATGTGGGAGGAGACATGTTTGAGAAAGTTCCAAATGGAGATGCTGTTTTCATGAAGTGGATACTTCATGATTGGAGTGATGATCATTGTATAAAGTTGTTGAAAAATTGCTACGATGCGATCCCAAATGATGGAAAGGTAATCATAGTGGACTCGATACTTCCAACATTGCCTGAGACCACAAGTGCAACAAAAGCCGTGGCCAATGCGATATGGTTGAGATGA 930 46.34 MASTAEDTTITSSNDAATAEEQHYAYAMQLATLSVVPMTLQAAFELGVFEILAKAGNGAELSPTEIAAEITTKNPEAAAKIDRMLRLLASHSVVGCSLAFDEDGNVQRVYSLTPVSKYYVHKILLHTWSELKNAIIGGGGVFSRAYGGVHAFEYLGLDPRFNQIFNTAMINHTTMPIKKIVESYKGFANIKQLVDVGGGLGVTLQVITSTYPSIKAINFDLPHVIRDAPPYSGVEHVGGDMFEKVPNGDAVFMKWILHDWSDDHCIKLLKNCYDAIPNDGKVIIVDSILPTLPETTSATKAVANAIWLR 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5232985 5235651 - CmPI595203_10g012350.1 Cmu10g1235 426765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1235 309 Pfam O-methyltransferase domain 128 302 IPR001077 GO:0008171(InterPro)
Cmu10g1235 309 PANTHER O-METHYLTRANSFERASE 23 300 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Cmu10g1235 309 Pfam Dimerisation domain 38 89 IPR012967 GO:0046983(InterPro)
Cmu10g1235 309 PIRSF O-mtase 5 308 IPR016461 GO:0008168(InterPro)
Cmu10g1235 309 Gene3D Vaccinia Virus protein VP39 162 304 IPR029063 -
Cmu10g1235 309 SUPERFAMILY Winged helix DNA-binding domain 19 121 IPR036390 -
Cmu10g1235 309 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 298 IPR029063 -
Cmu10g1235 309 Gene3D - 35 180 IPR036388 -
Cmu10g1235 309 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 309 IPR016461 GO:0008168(InterPro)
Cmu10g1235 309 FunFam Caffeic acid 3-O-methyltransferase 3 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1235 Cmu-Chr10:5232985 Cmu10g2070 Cmu-Chr10:26576577 3.90E-23 dispersed
Cmu10g1235 Cmu-Chr10:5232985 Cmu10g1236 Cmu-Chr10:5249650 2.30E-140 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1235 K13066 - csv:101214675 494.967