Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1240 ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCATCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG 528 56.44 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5304306 5304833 + CmPI595203_10g012400.1 Cmu10g1240 426770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1240 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cmu10g1240 175 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982(InterPro)
Cmu10g1240 175 MobiDBLite consensus disorder prediction 118 175 - -
Cmu10g1240 175 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cmu10g1240 175 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cmu10g1240 175 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cmu10g1240 175 MobiDBLite consensus disorder prediction 118 134 - -
Cmu10g1240 175 Gene3D Histone, subunit A 11 135 IPR009072 GO:0046982(InterPro)
Cmu10g1240 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 124 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cmu10g1240 175 FunFam Nuclear transcription factor Y subunit B-3 13 135 - -
Cmu10g1240 175 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1240 175 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0930 Cmu-Chr7:23476652 Cmu10g1240 Cmu-Chr10:5304306 1.80E-41 dispersed
Cmu09g0586 Cmu-Chr9:5362615 Cmu10g1240 Cmu-Chr10:5304306 1.30E-38 dispersed
Cmu10g1240 Cmu-Chr10:5304306 Cmu10g2778 Cmu-Chr10:34378623 5.00E-36 dispersed
Cmu10g1240 Cmu-Chr10:5304306 Cmu02g1376 Cmu-Chr2:27393942 1.40E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6953 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1240 K08065 - csv:101204640 308.531