Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1258 ATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCAGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGAGAGCAGCGCAAGACGGTAACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACCGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTTTGATGATGGTGGTGGCGGCTGGCTGGCTGGCTGTGGCTTGTGTGGCTGCAAGATAG 672 56.55 MLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGLMMVVAAGWLAVACVAAR 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5472870 5473657 + CmPI595203_10g012580.1 Cmu10g1258 426788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1258 223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 59 122 IPR003958 -
Cmu10g1258 223 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Cmu10g1258 223 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Cmu10g1258 223 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Cmu10g1258 223 Gene3D Histone, subunit A 45 159 IPR009072 GO:0046982(InterPro)
Cmu10g1258 223 FunFam Nuclear transcription factor Y subunit B-6 47 159 - -
Cmu10g1258 223 MobiDBLite consensus disorder prediction 1 48 - -
Cmu10g1258 223 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1258 223 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 42 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cmu10g1258 223 SUPERFAMILY Histone-fold 55 148 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1258 Cmu-Chr10:5472870 Cmu10g2778 Cmu-Chr10:34378623 7.10E-27 dispersed
Cmu10g1258 Cmu-Chr10:5472870 Cmu02g1376 Cmu-Chr2:27393942 2.10E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6954 PF00808 CBFD_NFYB_HMF 2.70E-25 CL0012 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1258 K08065 - csv:116402762 374.015