Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1269 ATGCAGGAACCTTCAAGAAAGAAAGTTCCAAATCAATCTCATAGGTTCTATGAACAGCCACAGCAAGAACCTGGTTCCTGTTACTGGCCTCCTATCAACCACGGAGGTGTCTTGTATCCTGACGATGTATACGAACAAAATCACTTACCATCTGAGACTTTCAAACATTCTTGCAACCTTGAGTCGTCCTCGGGAACTAGTAGTTACCCTCCTCAAAATTCTTCCTCTACTGCTAGCTTCACATCAAATGGAAGCCCTTCTTCACACCAAGAGTGCCATTCATACCCGTTAGACCCCTATTATTCTCCCGACAATAATTGTGGCTCACCTGTAAGTAGATCTTGCTTAACAGATGCCGCTGCTGATGACTTAAGGCACAAGATCAGGGAATTGGAGACTGCAATGCTTGGACCTGATGCAGATAGGCTTGACATCTATTCTGTCACGGAACCAGTTAATCCTGTATTACCTGTGCAAGAAATGGGGTGGAATGATGTGGCTGAGATAATCTCTAGAAGGGATTTGAAAGAGATGCTTTGTGCTTGTGCTCGAGCAATAGAAGAAAACGATATGATGACTGGAGAATGGTTGGTGTCAGAGTTACGTGGAATGGTCTCGGTTTCTGGTGAGCCGATTAAGCGTTTAGGGGCCTACTTGTTAGAGGCACTTGTTGCAAGGACAGCATCTTCAGGTAGTTCTATCTACAAAGCCCTAAGATGTAAAGAGCCTATAGGTGCTGAATTGCTCTCATACATGCATGTTCTCTACGACATTTGCCCTTATTTCAAGTTTGGGTACCTTTCAGCAAATGGGGCAATTGCTGAAGCCATAAAAGGTGAAAATAGAGTTCACATAATTGATTTTCAGATAGCTCAGGGAAATCAGTGGATCACATTGATGCAAGCTCTGGCCAATCGGCCTGGAGGGCCCCCAAAGGTTACTATTACAGGCATAGACGATTCGACTTCAGCTTTTGCTCGAGGAGGGGGGCTTGAGATTGTAGGAAAAAGGTTGACGATTTTGGCAGAGTCATTAAATGTGCCCTTTGAATTCCATGGCATTGCAGGCTCTGCTTCTGAAATTCAACGCGAAGATCTTAAAGTTCAACCAGGTGAAGCGATTGCTGTGAGTTTTGCCTTGGTGCTGCACCATATGCCAGATGAAAGTGTTGGTAGTCAGAATCACCGGGATCGAATTTTGCAGCTGGTCAAGAGTTTGTCTCCAAAAGTCGTGACGGTGGTCGAGCACGAGTCGAACAACAATACAGCTCCCTTTTTTCCCCGTTTCCTCCAGACATTGAAGTATTATACTGCTGTTTTCGAGTCCATAGATGTGACCCTCCCGAGAGATCACAAAGAGCGGATCAACGTGGAGCAGCACTGTTTAGCCCGGGACATCGTAAATTTAGTAGCATGTGAGGGACCCGAAAGAGTCGAACGCCATGAACTTTTCGGAAAGTGGAGATCACGGCTACTCATGGCTGGGTTTAAGCCACATCCTTTAAGCCCTTTTGTGAATGCTACTATTGAGGCACTGCTAAAGAACTACTGTGACAAGTACACACTTGAAGAAAGGGATGGAGTTCTATATCTTGGTTGGTTGAATCAAAATTTGGTTACCTCTAGTGCTTGGATTTGA 1638 44.93 MQEPSRKKVPNQSHRFYEQPQQEPGSCYWPPINHGGVLYPDDVYEQNHLPSETFKHSCNLESSSGTSSYPPQNSSSTASFTSNGSPSSHQECHSYPLDPYYSPDNNCGSPVSRSCLTDAAADDLRHKIRELETAMLGPDADRLDIYSVTEPVNPVLPVQEMGWNDVAEIISRRDLKEMLCACARAIEENDMMTGEWLVSELRGMVSVSGEPIKRLGAYLLEALVARTASSGSSIYKALRCKEPIGAELLSYMHVLYDICPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKVTITGIDDSTSAFARGGGLEIVGKRLTILAESLNVPFEFHGIAGSASEIQREDLKVQPGEAIAVSFALVLHHMPDESVGSQNHRDRILQLVKSLSPKVVTVVEHESNNNTAPFFPRFLQTLKYYTAVFESIDVTLPRDHKERINVEQHCLARDIVNLVACEGPERVERHELFGKWRSRLLMAGFKPHPLSPFVNATIEALLKNYCDKYTLEERDGVLYLGWLNQNLVTSSAWI 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5590385 5592022 + CmPI595203_10g012690.1 Cmu10g1269 426799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1269 545 MobiDBLite consensus disorder prediction 1 31 - -
Cmu10g1269 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 127 544 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cmu10g1269 545 Pfam GRAS domain family 175 544 IPR005202 -
Cmu10g1269 545 MobiDBLite consensus disorder prediction 55 91 - -
Cmu10g1269 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1880 Cmu-Chr1:32360723 Cmu10g1269 Cmu-Chr10:5590385 9.10E-53 dispersed
Cmu02g0941 Cmu-Chr2:13252983 Cmu10g1269 Cmu-Chr10:5590385 3.40E-167 dispersed
Cmu03g0756 Cmu-Chr3:1730486 Cmu10g1269 Cmu-Chr10:5590385 7.10E-57 dispersed
Cmu05g1543 Cmu-Chr5:24298091 Cmu10g1269 Cmu-Chr10:5590385 8.80E-34 dispersed
Cmu09g0489 Cmu-Chr9:4559299 Cmu10g1269 Cmu-Chr10:5590385 3.80E-24 dispersed
Cmu09g0932 Cmu-Chr9:9314219 Cmu10g1269 Cmu-Chr10:5590385 4.80E-112 dispersed
Cmu10g1269 Cmu-Chr10:5590385 Cmu11g0954 Cmu-Chr11:13186053 1.50E-70 dispersed
Cmu10g1269 Cmu-Chr10:5590385 Cmu10g2833 Cmu-Chr10:34841085 4.50E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6956 PF03514 GRAS 1.90E-129 CL0063 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1269 K27748 - csv:101220072 1010.36