Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1270 ATGGACCCCACTGACTCCGACCTCGCCGATCCATCTCATGCCTCCTCCTCCGCTGGCGCTAAGTACAAGCTCATGTCTCCGGCCAAGCTTCCGATCTCTAGGTCCCCTTGCATTACTATCCCTCCTGGCCTCAGCCCCACTTCCTTTCTCGACTCTCCTGTTCTGCTTACCAACTTGAAGGTAGAGCCTTCTCCGACTACTGGGTCCTTTACCAAGCTTCCGATGGCACATGACTCTTCTAGCTCAGCTATTTATCCAGTGACCACCATGGCCTTCTCAAATACTAATGCTTCAGATGAAGGAAGATCCAACTACTTCGAGTTCAAACCATATGTTGGACCAAATATGGTTCCTGCAGATTTGAGTCATAGGAAATGTGAACAATCTTCTGAAGTTCAAGTTCAAGGTCAACCTCAACCATTTACTGCTCCACCCATGACTAAAATTGAGATCAATGTCGTTTCAAATGATTTGAGCCGATCAACCCAGATGGATACACATCCAGTTGGCTCAGGGCCTAGTGCTCCTGAAGCCGATGGAGATGATATCAGCCATAGTTTGAACACAAATAGCAGGGTTCAGGCTCCACAATCTGATCCAAAAGGCAGTGGCATTCCAGTGGTTTCAGATAGGTTGTCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCTCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCCCATGATGGGCAAATAGCTGATATTATCTATAAGGGTACCCACGATCATCCTAAGCCTCAGCCAAGCCGGCGATATTCTGCCAGTGCTTCTGTGAATGTTCAAGAAGATGGGCCTGATAAGCCTTCACCTTTAACTGGCCAAGATGACAGATTGTTCAGCATGTATGCTCAGACAGTTCATAACCTTGAGCCAAATGGAACTACAGAACCATCACTGGCCGCAAACGATAGCATCAATGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCAGGATGAGGTTGATGACGATGACATATTCTCGAAGCGGAGGAAAATGGAACTTGGTGGTTTCGATGTCTGCCCAATGGTTAAACCAATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGTGAGGTAGATATACTGGATGACGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAATCCCAACCCAAGGAGTTATTACAAATGCACAAATGTTGGATGCCCTGTTAGAAAACATGTCGAAAGAGCATCCCATGACCCGAAAGCTGTTATAACTACATATGAGGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCATGATGTCGGGGGTCCATCGACAATTGCACCATCGAGGTATAGACTCGAGGAGAGCGACACCATAAGCCTTGATCTTGGCGTTGGCATTGGCACTGGCACGGGTGGTGAGAATAGATCAAATGATTACAGGCAGGCATTGCATTCACAACTTGTTGAAAACCAAACTCCAAATGGCAATTTCAACTTTGAAGTAGTTCAAGAGAACTCAGCCCCGACCTATTTCGGTGTGATCAATAGAGGTATAAATCAACATGGATCGAGAGAGAGTTTGAGTGAAAGCCACAATAAGGAGATTGCTCCGCTAAATCATTCGTCTCACCCATATCCGACGAGCATTGGGAGAATACTAACAGGGCCTTAA 1728 46.01 MDPTDSDLADPSHASSSAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYPVTTMAFSNTNASDEGRSNYFEFKPYVGPNMVPADLSHRKCEQSSEVQVQGQPQPFTAPPMTKIEINVVSNDLSRSTQMDTHPVGSGPSAPEADGDDISHSLNTNSRVQAPQSDPKGSGIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIADIIYKGTHDHPKPQPSRRYSASASVNVQEDGPDKPSPLTGQDDRLFSMYAQTVHNLEPNGTTEPSLAANDSINEGAGTTLPCKNQDEVDDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVGGPSTIAPSRYRLEESDTISLDLGVGIGTGTGGENRSNDYRQALHSQLVENQTPNGNFNFEVVQENSAPTYFGVINRGINQHGSRESLSESHNKEIAPLNHSSHPYPTSIGRILTGP 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5592451 5598087 - CmPI595203_10g012700.1 Cmu10g1270 426800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1270 575 MobiDBLite consensus disorder prediction 315 347 - -
Cmu10g1270 575 ProSiteProfiles WRKY domain profile. 384 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1270 575 MobiDBLite consensus disorder prediction 551 567 - -
Cmu10g1270 575 MobiDBLite consensus disorder prediction 161 214 - -
Cmu10g1270 575 Pfam WRKY DNA -binding domain 214 270 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1270 575 Pfam WRKY DNA -binding domain 390 447 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1270 575 SUPERFAMILY WRKY DNA-binding domain 381 449 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1270 575 MobiDBLite consensus disorder prediction 183 198 - -
Cmu10g1270 575 MobiDBLite consensus disorder prediction 445 467 - -
Cmu10g1270 575 MobiDBLite consensus disorder prediction 264 301 - -
Cmu10g1270 575 ProSiteProfiles WRKY domain profile. 208 272 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1270 575 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 104 457 IPR044810 GO:0003700(InterPro)
Cmu10g1270 575 MobiDBLite consensus disorder prediction 1 20 - -
Cmu10g1270 575 FunFam WRKY transcription factor 33 376 442 - -
Cmu10g1270 575 SUPERFAMILY WRKY DNA-binding domain 210 272 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1270 575 MobiDBLite consensus disorder prediction 541 575 - -
Cmu10g1270 575 Gene3D WRKY domain 207 273 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1270 575 FunFam WRKY transcription factor 204 273 - -
Cmu10g1270 575 SMART WRKY_cls 389 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1270 575 SMART WRKY_cls 213 271 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1270 575 Gene3D WRKY domain 376 442 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1270 575 MobiDBLite consensus disorder prediction 315 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1270 Cmu-Chr10:5592451 Cmu11g0463 Cmu-Chr11:5135642 2.20E-72 dispersed
Cmu03g1634 Cmu-Chr3:19049389 Cmu10g1270 Cmu-Chr10:5592451 5.00E-78 transposed
Cmu10g1215 Cmu-Chr10:4932714 Cmu10g1270 Cmu-Chr10:5592451 2.60E-84 transposed
Cmu10g1270 Cmu-Chr10:5592451 Cmu02g0273 Cmu-Chr2:2505931 9.60E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6957 PF03106 WRKY 3.30E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1270 - - - 0.0