Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1271 ATGATGCTTAGTATGATGACAGAGTCATCAGAGAAGGAGACAGAGGCATTTGTAGAGGTGGATCCGACGGGTCGATATGGGCGGTACGGGGAGCTTCTGGGGACAGGGGCGGTGAAGAAAGTGTACAGAGCATTTGATCAAGAAGAAGGAATAGAGGTAGCTTGGAACCAAGTGAAACTAAGGAGTTTTTCAAATGATCCATCCATGATAGATAGGTTGTATTCAGAGGTGAGATTGTTAAGAACCTTAAAGAACAACAACATAATTGCCTTGTATGATGTTTGGCTTGACAAACTTCATGGAACCTTAAATTTCATTACTGAGGTTTGTACAAGTGGAAACCTTAGAGAGTACAGGAAGAAGCATAGGCAAGTCTCTTTGAAAGCTTTGAAGAAATGGTCCAAACAAATTCTTAAGGGTTTGCATTATTTGCATTCTCATGACCCTTGTGTTATTCATAGAGATCTCAACTGTAGCAACCTCTTTGTCAATGGCAATGTTGGCCAGGTAAAGATTGGTGACTTGGGTTTAGCAGCAACCGTGAGAAAGAATCACTCAGCTCATTCAGTGCTTGGGACACCAGAATTCATGGCACCTGAGCTATATGAAGAGCATTACACCGAGCTTGTGGACATATATTCATTTGGAATGTGTTTGCTTGAATTAGTCACTTTGGAAATTCCCTATAGTGAATGTGACAATGTTGCCAAAATCTATAAAAAAGTCTCCTCAGGCATCAAGCCTCAAGCCCTTGACAAGGTCAAGGACCCTGAAGTCAAGGCTTTCATCGAGAATTGCCTTGCCGAATCTCGAGCTCGGCCCTCAGCTGCTGACCTCCTCCGCCACCCCTTCTTCGGAGAAATTGATGATGACGAAAACGACGACGACAATGATTATTAA 900 42.89 MMLSMMTESSEKETEAFVEVDPTGRYGRYGELLGTGAVKKVYRAFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVRLLRTLKNNNIIALYDVWLDKLHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILKGLHYLHSHDPCVIHRDLNCSNLFVNGNVGQVKIGDLGLAATVRKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVSSGIKPQALDKVKDPEVKAFIENCLAESRARPSAADLLRHPFFGEIDDDENDDDNDY 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5626310 5628587 + CmPI595203_10g012710.1 Cmu10g1271 426801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1271 299 PIRSF TyrPK_CSF1-R 26 132 - -
Cmu10g1271 299 PIRSF TyrPK_CSF1-R 119 282 - -
Cmu10g1271 299 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Cmu10g1271 299 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1271 299 CDD STKc_WNK 25 285 - -
Cmu10g1271 299 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Cmu10g1271 299 SUPERFAMILY Protein kinase-like (PK-like) 29 290 IPR011009 -
Cmu10g1271 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 286 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cmu10g1271 299 FunFam probable serine/threonine-protein kinase WNK9 110 291 - -
Cmu10g1271 299 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Cmu10g1271 299 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0954 Cmu-Chr6:13768921 Cmu10g1271 Cmu-Chr10:5626310 3.10E-101 dispersed
Cmu09g1042 Cmu-Chr9:10509640 Cmu10g1271 Cmu-Chr10:5626310 1.80E-11 dispersed
Cmu10g1271 Cmu-Chr10:5626310 Cmu05g1823 Cmu-Chr5:28327169 1.10E-22 dispersed
Cmu10g1271 Cmu-Chr10:5626310 Cmu10g2661 Cmu-Chr10:33407916 1.60E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75830 PF00069 Pkinase 8.50E-52 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1271 K08867 - csv:101221172 555.058