Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu10g1278 | ATGGCACAAAAATCAGTTAGAAAGTTTCTTGCTAGACCTCAACATGAAGGCCTTGGCGCTGTTGTAAGAAGAAGCATCGGCAGGTTTGAGCTCAAATACTTTGATCCATTCCTTGTTCTCGATGAGTTTTCTGTTACTGCACCTGCTGGGTTTCCTGATCATCCACATAGAGGATTTGAAACTGTCACTTACATGTTAGAGGGAGCAATGACACATGAAGATTTCAAAGGGCATAAAGGAAGAATTGGAGCTGGTGACTTGCAATGGATGACTGCTGGCAAAGGCATTGTTCACTCTGAAATGCCTGCATCCCATGGCACCCAACATGGCTTACAACTTTGGATCAATCTTTCCTCCAAACACAAAATGATTGAGCCAAGGTATCAAGAAATACACAACGAGGACGTAGTAGAAGTTACAAGAGAAGGAGTAAAAGTGAGAGTGATAGCAGGGGAAGCCTTAGGAGCAAAATCCCCAATCTACACCAAAACTCCAACCATGTACTTGGACTTCACTCTCGGCCCGGGATCTCGCATCGAGCAGCCGATCCCGGTGGGGTGGAATGCGTTCGTGTACGTACTAGAAGGTGAGGGCGGAGTGTTTGGGAGCATGAAATCGATGCCGATTACGCCACATCACCTTCTTTTGTTGGGGAATGGGGATGGGTTGGAGGCTTGGAACAAGTCCTCCTCCAAAGCCCTAAGGTTCATATTGGTTGGGGGTCAGCCATTGAATGAGAGCGTTGTGCAGTTGGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACCATAGAGGATTTTGAGAATTGTACAAATGGATTTGAGAGAGCAAGGCATTGGAGTTCACAACCTTAA | 861 | 45.99 | MAQKSVRKFLARPQHEGLGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLEGAMTHEDFKGHKGRIGAGDLQWMTAGKGIVHSEMPASHGTQHGLQLWINLSSKHKMIEPRYQEIHNEDVVEVTREGVKVRVIAGEALGAKSPIYTKTPTMYLDFTLGPGSRIEQPIPVGWNAFVYVLEGEGGVFGSMKSMPITPHHLLLLGNGDGLEAWNKSSSKALRFILVGGQPLNESVVQLGPFVMNTQEEIDQTIEDFENCTNGFERARHWSSQP | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 5688773 | 5691429 | - | CmPI595203_10g012780.1 | Cmu10g1278 | 426808 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu10g1278 | 286 | Pfam | Pirin | 22 | 115 | IPR003829 | - | |
| Cmu10g1278 | 286 | Gene3D | Jelly Rolls | 137 | 244 | IPR014710 | - | |
| Cmu10g1278 | 286 | FunFam | pirin | 16 | 153 | - | - | |
| Cmu10g1278 | 286 | CDD | cupin_pirin_N | 20 | 117 | - | - | |
| Cmu10g1278 | 286 | Gene3D | Jelly Rolls | 16 | 270 | IPR014710 | - | |
| Cmu10g1278 | 286 | Pfam | Pirin C-terminal cupin domain | 168 | 275 | IPR008778 | - | |
| Cmu10g1278 | 286 | PANTHER | PIRIN-RELATED | 3 | 285 | IPR012093 | - | |
| Cmu10g1278 | 286 | SUPERFAMILY | RmlC-like cupins | 6 | 284 | IPR011051 | - | |
| Cmu10g1278 | 286 | PIRSF | Pirin | 1 | 283 | IPR012093 | - | |
| Cmu10g1278 | 286 | CDD | cupin_pirin_C | 165 | 243 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu09g2001 | Cmu-Chr9:36097540 | Cmu10g1278 | Cmu-Chr10:5688773 | 1.60E-130 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu10g1278 | K06911 | - | csv:101204082 | 517.694 |