Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1306 ATGGCCGAACCCATGGAGGAAAACGCGGTTGTTGATGCCGAACCCACTGCCGACAAGAGGCCTGTTGAGAATCATGGGGACGATGGACTTGCGGAGCCTCACTTGAGGAAGAAGCCCCGGAATGGTTGCGACTTGGGTCCGAATCTCAGAAGGGTCGCTGAGATTGTGTTGGTTATGTCCACAATGACGGCGTTGCGTGCTGGGAAGAAGCCGAGTGATGCTGAGGTTGAATTAATGGCTGAGGCTAGGGCTAAGCTGGCTCAGATTTGTGAAGGGTTGGCTCCTAAGGATATTGTGGGAAGGGAAGGTATTAGCTCTCTGATTGAAGATTTGGGGCTGCATGGCAATGCTAGGGATCAGAAGTTAGGGTTGCGGGGTACCAGGTTGACGATAGCGGAGAAGTTGGCACAGGCAAAGAAGAAGATGGAAGATTCCAAGAAATATGTCCCACCTCCAGGTTATGGATCTCATCCAACCCAAAAAAACTTCAGTTCATCAGTTGAGAGCCGTGGGCCATTGCCTACAGTACGGATGTTTCCTTCAGACAAATCAAGTACTGTCCCAACTTCTGTGGGAAACACTGCGGGTACTCTGCCTTCAGGTCATGTTTCTGTTGCTGGTTCTACATCTATACAGGTTCAAGCACAACCACCGAGCAATGAAGTCAGGGCACATATTATTTCAAGTGGATATCCTATTGGTCATCAAGGAAGGGATTCTTCTTCACTCTTGCATGGCATTGAAAGACCATTAAATGGGACATATGGATCCCCAATGCAAGTTAACTCTTTGGCGAATCATCCTCTGGTGAGTGCTCCAACCTGGTCTGCTCAAACTCAATCCACCTTGTCGGCTAAAGGTGGGCCAGAGCACAAGTTTGCCAATCATTCTGCTGTTAATGCTCAGGGAACCACAGACTCAAGAGCATTAAGATCGTCTTCTCAAGCAGCAAGGGACCAGAGCTTTAGACCTCCTATTTCTCAAACTGGGACAGGGAATATTACTGGTTTGCAGCCGCCATTACAGAGCATGAATTTTGTGCAAGGACCTTCACTTTCTAATAACCATAATGAAATTGTCAAAATTATCCAGAAGCTCTTACAGCCACAACTTCCCGATCATCCTACTTGGAATCCTCCTTCAAGAGATTACATGAACAAGGCTGTAACTTGCCAAACTTGTCAAGCTACCATTAATGAGATTGATACTGTACTTATATGTGATGCTTGTGAGAAAGGATATCACTTGAAATGTGTACAGTCACCTAATCAGAGAGCAATCCCTAGAGGTGAATGGCACTGCCCTAGATGTTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATATGGGCGTGTCATGAGGAGTAACCCACCGCCAAAGTTATCGGTCAATACCAGTGGAACTCAGCCACAAGAGAAGAGATCAGGAGCCATAGAACAGAAGGCCAGTGCTGGTCAGCTGAAGTTAGTTTCTAATGGAGGTTCAGATTTGCCAAGTCCTCAGCCTGCTGACTATGGAAGCAATAACAATGAATCATCTGGTACCAAAATTCCAAATGTGGAGATTCATGGAAATAGTTTTTTACCAATTAGGAATGACATAGATGAGAAACCAACCTCTTCCACTTCCTTGAATACCCCTGCCAAATCCTTGGGGCTAGTTTCTGAACCCTCTTCTGCTGAGTTATCAAGTGAAATATCTGCTCAGCACATTAAAAGTTCTCAAGCATCAATAGGTGAAGATAAATCCTCAGCGAAAGCAGAGCCTCCAGAAGAATGCCGAACAACGGCTGACAATTCTAGTAACCCTAAACCCCCTGACATTTCTCAAATTGTTGATCAGCAAATGGTTTCTGAAGGTCCAGAGCTACCCTCCTCAACGGCAAGTGCTCATGATACTTCAAATGTGAAGAAAGATGGCCATGAAGTTCTGCAGGAGAATGATGTTGAAAATTTTGAAGCTAGCATCATAAATAGAGAGCAGGCTGAGACTTCTTCCGATGACTTGCATAATGTTGAATGGATTGGAAACCCACATCAGATTTCAGATATGAAGGCATATTACAAATCCTGTCGAGTTGATGGTGTTACATATAAAGTTGAAGATTTTGCTCTTTTTCAATCCAGCGGGAAATTGATGCCCTATAGGCTTCAGTCCTTCAGCCATGAATATGAAAGTGGGTTGAACTTGGCTATTCTTAAGAAGTGTTACTTTTATGAGGACTTGCCAAAGGAAGTTGCCCATCTCCACCCGTGCTCCCCTGAACAAGACGAGGTATATACATCCGATGGCCATATTTGTTTAGATGTGGGCTTAATTCGAGGCCCATGCGAAGTTCTTCCTTCTGCGAAGTATCAAGAAGAACTTGGAAGACGAAAACAATTGGGTCTTGGGGCAGATAATGGAATAAAACCAATTTTCCTGTGCAAATGGTTTTATACTGAAGCTAACAAGGAATTTGTACCTTTTACTGGCACAATCTGTGAAAACTTCTCATTGACGCAGAGTCCAACCCTTGCAAGGACAAGTTGA 2535 44.54 MAEPMEENAVVDAEPTADKRPVENHGDDGLAEPHLRKKPRNGCDLGPNLRRVAEIVLVMSTMTALRAGKKPSDAEVELMAEARAKLAQICEGLAPKDIVGREGISSLIEDLGLHGNARDQKLGLRGTRLTIAEKLAQAKKKMEDSKKYVPPPGYGSHPTQKNFSSSVESRGPLPTVRMFPSDKSSTVPTSVGNTAGTLPSGHVSVAGSTSIQVQAQPPSNEVRAHIISSGYPIGHQGRDSSSLLHGIERPLNGTYGSPMQVNSLANHPLVSAPTWSAQTQSTLSAKGGPEHKFANHSAVNAQGTTDSRALRSSSQAARDQSFRPPISQTGTGNITGLQPPLQSMNFVQGPSLSNNHNEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQATINEIDTVLICDACEKGYHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGTQPQEKRSGAIEQKASAGQLKLVSNGGSDLPSPQPADYGSNNNESSGTKIPNVEIHGNSFLPIRNDIDEKPTSSTSLNTPAKSLGLVSEPSSAELSSEISAQHIKSSQASIGEDKSSAKAEPPEECRTTADNSSNPKPPDISQIVDQQMVSEGPELPSSTASAHDTSNVKKDGHEVLQENDVENFEASIINREQAETSSDDLHNVEWIGNPHQISDMKAYYKSCRVDGVTYKVEDFALFQSSGKLMPYRLQSFSHEYESGLNLAILKKCYFYEDLPKEVAHLHPCSPEQDEVYTSDGHICLDVGLIRGPCEVLPSAKYQEELGRRKQLGLGADNGIKPIFLCKWFYTEANKEFVPFTGTICENFSLTQSPTLARTS 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5962671 5972750 - CmPI595203_10g013060.1 Cmu10g1306 426836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1306 844 MobiDBLite consensus disorder prediction 299 334 - -
Cmu10g1306 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 379 452 IPR013083 -
Cmu10g1306 844 MobiDBLite consensus disorder prediction 445 609 - -
Cmu10g1306 844 SUPERFAMILY FYVE/PHD zinc finger 381 447 IPR011011 -
Cmu10g1306 844 ProSiteProfiles Zinc finger PHD-type profile. 388 440 IPR019787 -
Cmu10g1306 844 MobiDBLite consensus disorder prediction 459 477 - -
Cmu10g1306 844 MobiDBLite consensus disorder prediction 1 44 - -
Cmu10g1306 844 MobiDBLite consensus disorder prediction 12 44 - -
Cmu10g1306 844 MobiDBLite consensus disorder prediction 157 171 - -
Cmu10g1306 844 MobiDBLite consensus disorder prediction 140 190 - -
Cmu10g1306 844 MobiDBLite consensus disorder prediction 595 609 - -
Cmu10g1306 844 ProSiteProfiles BAH domain profile. 697 825 IPR001025 GO:0003682(InterPro)
Cmu10g1306 844 SMART PHD_3 390 438 IPR001965 -
Cmu10g1306 844 MobiDBLite consensus disorder prediction 486 521 - -
Cmu10g1306 844 MobiDBLite consensus disorder prediction 536 582 - -
Cmu10g1306 844 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 825 - -
Cmu10g1306 844 Gene3D - 677 841 IPR043151 -
Cmu10g1306 844 ProSitePatterns Zinc finger PHD-type signature. 391 437 IPR019786 -
Cmu10g1306 844 Pfam PHD-finger 391 437 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1306 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6958 PF00628 PHD 9.30E-09 CL0390 Cmu TR