Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1318 ATGAGGAGAGGGAGAGGGGCGGCGGTGCCGGTACCGGCGGCGCGTGAACCACCTACCACCGGATCGGAACGGAGATACAGAGGAGTCCGTAAAAGGCCATGGGGAAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACAAGAGTTTGGTTAGGGACCTTTGATTCCGCCGAAGACGCCGCCCGTGCTTACGATAACGCCGCCATAACCCTCCGAGGCCCTAAAGCTAAAACCAATTTCCCTCTTCCTAATCCCACTTCGTTTTTCGATTACCCTCCTTTCCCTCCTCATCCCGTCAACGCTCCAGATCCCTTCCCCGATTCCCGATTTCAGATTAACCCTCATAGACCTACTTCCAGCAGTTTGAGCTCCACCGTCGAATCCTTCAGCGGTCCTCGCCCTCCCTCCGCCGCCGCTACTACGACCACTTCCCCCTCCCGCCGTTACCCACGTACACCGCCTCTCCTCCCTGAAGATTGCCATAGCGATTGTGATTCTTCCTCTTCCGTCATCGACGATGGCGACGACATCGCTTCCTCCTCCATCCTTCCTCGGAAACCACCTCTGCCTTTCGATCTCAACATTCCACCTTCCGATCTTCTTGATTTTACCGCCGATGATCTTCGATGTACCGCTTTGTGCCTCTGA 651 56.07 MRRGRGAAVPVPAAREPPTTGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPNPTSFFDYPPFPPHPVNAPDPFPDSRFQINPHRPTSSSLSSTVESFSGPRPPSAAATTTTSPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSILPRKPPLPFDLNIPPSDLLDFTADDLRCTALCL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6102580 6103230 - CmPI595203_10g013180.1 Cmu10g1318 426848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1318 216 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1318 216 SMART rav1_2 25 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1318 216 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Cmu10g1318 216 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677(InterPro)
Cmu10g1318 216 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1318 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 174 - -
Cmu10g1318 216 MobiDBLite consensus disorder prediction 94 169 - -
Cmu10g1318 216 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1318 216 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1318 216 MobiDBLite consensus disorder prediction 1 28 - -
Cmu10g1318 216 CDD AP2 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1318 216 MobiDBLite consensus disorder prediction 113 150 - -
Cmu10g1318 216 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0343 Cmu-Chr8:10183074 Cmu10g1318 Cmu-Chr10:6102580 1.40E-18 dispersed
Cmu09g0304 Cmu-Chr9:2903446 Cmu10g1318 Cmu-Chr10:6102580 3.40E-19 dispersed
Cmu09g1993 Cmu-Chr9:36002124 Cmu10g1318 Cmu-Chr10:6102580 3.60E-52 dispersed
Cmu10g1318 Cmu-Chr10:6102580 Cmu11g1779 Cmu-Chr11:29893211 6.00E-23 dispersed
Cmu10g1318 Cmu-Chr10:6102580 Cmu02g1803 Cmu-Chr2:31974544 5.20E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6959 PF00847 AP2 5.00E-14 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1318 K09286 - csv:101219993 295.049