Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1324 ATGGACCACCACCAAGCATCTTTCCTTCAAAATTTCCGCTTCCAATGCGTAACGTTTCCCTGCCGCCTCTCTCTCTTTCTTTCTTTGGACCATCGCCGGCATCTTTCTTCAAAACATCCACTTCCAAGGCGTAACGCTCCTCCGCTCCTCCCCTCCTCCCCTCCTCCTCTCTCTTTCTCCATTTCCTCTCCCTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTCACTCTTTACTTCAGTCTCAGAACTCGAGCCTATCCAGGATATTTTTGACATTAAAATGGCTGCTTCATCATCCCTTATGGCACACTCTTTGCATGCGCATGCGTCCACTGAAACGGCCATAAAATGCTGTAAGGGCTATATGTACGGCAACTCCCGGATTGGATACTCCAAGTCCAAGTTCCTAACAAGTCCTACATTTTCACATGACGAGAATTCATCAAAATGGGAATGCATTGAGAAACGTCCAATGAGAAATGAAATCCGGTGCCGAGCTGTGGAAATTGAGAATTCACTTTCTCCTTTTGTTAGCAAAAAGTTTGAGCTTGATGATGTGATTGAAGCTCAACAATTTGATAGAGAGATTCTCAATTATATTTTTGAAGTTGCACTTGATATGGAAAAGATTGAAAAAAGTTCATCTAAAAGCCAAATGCTGAAGGGATATTTGATGGCTACCCTGTTCTACGAGCCCTCAACTAGAACTAGGCTTTCGTTTGAATCTGCCATGAAAAGGTTAGGTGGGGAGGTATTGACAACTGAAAATGCGCGGGAGTTTTCTTCAGCAGCCAAAGGAGAAACCCTTGAAGATACGATCCGAACTGTTGAGGGATACTCGGATATAATTGTGATGCGGCATTTTGAAAGTGGTGCTGCTAAGAAAGCTGCTGCAACAGCTAGCATTCCTATTATTAATGCTGGTGATGGTCCTGGACAACATCCAACTCAGGCTCTTCTAGATGTATATACTATTCAGAGAGAGATAGGAAAACTTGATGGAATTAAAGTCGGGCTCGTGGGAGATCTTGCTAATGGGAGAACTGTAAGGTCACTTGCATATTTGCTCGCCAAGTATAAAGATGTGAAAATATACTTTGTCTCTCCAGATGTTGTAAAAATGAAGGATGATATAAAAGACTATTTGACATCACAAGATGTGAAATGGGAAGAATGCGACAACTTGATGGAAGTTGCGTCAGAGTGTGATGTTGTATATCAAACTCGTATTCAGCGGGAAAGATTTGGAGAGAGGGTTGATCTTTATGAACAAGCTAGAGGCAAGTACATTGTGGATAAAAATGTGTTAAAAGTGATGCAAAGACATGCTGTGGTCATGCACCCCCTCCCTAGGCTTGATGAGATCACTGTTGATGTAGATGAGGATCCAAGGGCTGCCTACTTCCGGCAAGCAAAGAATGGTCTCTATATTCGGATGGCACTCGTGAAACTCTTGCTACTTGGTGAATGGCTTGATCCTGTTTGCGAAGGAGAAATGCGAGTTACAATTTGCTGA 1545 42.59 MDHHQASFLQNFRFQCVTFPCRLSLFLSLDHRRHLSSKHPLPRRNAPPLLPSSPPPLSFSISSPSFLLLLLLLLLLLLLLLLLHSLFTSVSELEPIQDIFDIKMAASSSLMAHSLHAHASTETAIKCCKGYMYGNSRIGYSKSKFLTSPTFSHDENSSKWECIEKRPMRNEIRCRAVEIENSLSPFVSKKFELDDVIEAQQFDREILNYIFEVALDMEKIEKSSSKSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAAKKAAATASIPIINAGDGPGQHPTQALLDVYTIQREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYKDVKIYFVSPDVVKMKDDIKDYLTSQDVKWEECDNLMEVASECDVVYQTRIQRERFGERVDLYEQARGKYIVDKNVLKVMQRHAVVMHPLPRLDEITVDVDEDPRAAYFRQAKNGLYIRMALVKLLLLGEWLDPVCEGEMRVTIC 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6167936 6171799 + CmPI595203_10g013240.1 Cmu10g1324 426854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1324 514 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 195 336 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Cmu10g1324 514 NCBIfam aspartate carbamoyltransferase 195 496 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Cmu10g1324 514 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 343 494 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cmu10g1324 514 Gene3D Aspartate/ornithine carbamoyltransferase 324 483 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cmu10g1324 514 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 239 246 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cmu10g1324 514 FunFam Aspartate carbamoyltransferase 195 327 - -
Cmu10g1324 514 FunFam Aspartate carbamoyltransferase 2 328 483 - -
Cmu10g1324 514 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 193 496 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cmu10g1324 514 PRINTS Aspartate carbamoyltransferase signature 415 424 - -
Cmu10g1324 514 PRINTS Aspartate carbamoyltransferase signature 229 251 - -
Cmu10g1324 514 PRINTS Aspartate carbamoyltransferase signature 269 278 - -
Cmu10g1324 514 PRINTS Aspartate carbamoyltransferase signature 477 491 - -
Cmu10g1324 514 PRINTS Aspartate carbamoyltransferase signature 323 340 - -
Cmu10g1324 514 PRINTS Aspartate carbamoyltransferase signature 455 460 - -
Cmu10g1324 514 Gene3D Aspartate/ornithine carbamoyltransferase 196 491 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cmu10g1324 514 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 189 496 - -
Cmu10g1324 514 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 324 335 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cmu10g1324 514 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 451 460 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cmu10g1324 514 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 239 258 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cmu10g1324 514 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 461 484 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cmu10g1324 514 Hamap Aspartate carbamoyltransferase [pyrB]. 193 498 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1324 K00609 - - csv:101220705 727.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0321 Cmu-Chr4:8827584 Cmu10g1324 Cmu-Chr10:6167936 1.30E-35 dispersed
Cmu10g1324 Cmu-Chr10:6167936 Cmu04g0322 Cmu-Chr4:8829049 4.30E-83 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006067 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 2 1 1 0 1 3 1 1 1 2 0 2 6 1 37