Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1332 ATGGCCAACAAATTGGGACCTCCTAATTCTTCTATCCTTTCCTCTCTCCTCTTCCTCACTTTGATCATCAGAACTAGTTTAGCGGCTCGTAATCTCAACGACAATGTGTTAGAATGGGTGAAGAAGGACCATCATCGTTTTCTCCGTGCTGTTATTTACGTCTCCAATCTAGACCGTTCTGTTAGGTTTTACACGCAAAGCTTTGGAATGAAACTTTTGAAAAGAAGGAACTTCCCAGATCGTCAATACAAGGACGCCCTCATTGGGTTTGGGCCTCAAAATACTCACTTTTTGTTAGAACTAAGACATCGACATGATTCGAATGATGTATTTATTGGGACAGAGTTTGGACATTTTGGGATTGCCACTCAAGATGTCTACAAATCTGTGGAGAAAGCTCGAGCAAATGGTGCATTGGTGATCCACAAGCCCCAAAAAGTTAACCAAACCATCGTTGCCTTTGTGCAAGATCGTGATGGCTATAAGTTTAAGCTCATTCAAAGGACTTCTTTAACTGATCCTCTTGTTCAAATCATGCTTCATGTACAAGATTTGAATCCTTCCCTCAACTTCTATACAAAGGCATTGGGAATGAAGTTGTTTGAAAGGCAAAACAATTCAACAGGACAGATTGTTTCGGGGACTTTGGGTTATGGAATAAACCAAAGTAAAACAACAGTGTTGCAATTGGAGAAAAGGAAAAACATCCCTCGTGATGATGGACGAGATGGCTATTCAATGGTGTATATTGGTACTGACAACGTAAACAAGAGTGCTGAAGCTGCTAAGTTGGTAATGAAAGAGCTTGGTGGTAACATAGTAATCGAGCCGGTTCTTTTGTCCAATATCAATGTCAAATTAACTGGCTTTAGTGACCCAGATAATTGGATAACGATTATGGTTGACAATAAAGATTATCAAAGAGGAACACTATAA 936 39.74 MANKLGPPNSSILSSLLFLTLIIRTSLAARNLNDNVLEWVKKDHHRFLRAVIYVSNLDRSVRFYTQSFGMKLLKRRNFPDRQYKDALIGFGPQNTHFLLELRHRHDSNDVFIGTEFGHFGIATQDVYKSVEKARANGALVIHKPQKVNQTIVAFVQDRDGYKFKLIQRTSLTDPLVQIMLHVQDLNPSLNFYTKALGMKLFERQNNSTGQIVSGTLGYGINQSKTTVLQLEKRKNIPRDDGRDGYSMVYIGTDNVNKSAEAAKLVMKELGGNIVIEPVLLSNINVKLTGFSDPDNWITIMVDNKDYQRGTL 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6243380 6252583 + CmPI595203_10g013320.1 Cmu10g1332 426862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1332 311 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 176 278 IPR004360 -
Cmu10g1332 311 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 48 164 IPR004360 -
Cmu10g1332 311 PANTHER LACTOYLGLUTATHIONE LYASE 32 308 - GO:0004462(PANTHER)|GO:0005737(PANTHER)|GO:0019243(PANTHER)
Cmu10g1332 311 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 176 298 IPR029068 -
Cmu10g1332 311 Gene3D - 171 309 IPR029068 -
Cmu10g1332 311 ProSitePatterns Glyoxalase I signature 1. 177 198 IPR018146 GO:0004462(InterPro)|GO:0046872(InterPro)
Cmu10g1332 311 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 174 303 IPR037523 -
Cmu10g1332 311 Gene3D - 21 170 IPR029068 -
Cmu10g1332 311 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 46 169 IPR029068 -
Cmu10g1332 311 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 46 168 IPR037523 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1332 K01759 - - csv:101203268 533.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0924 Cmu-Chr6:12902047 Cmu10g1332 Cmu-Chr10:6243380 9.20E-65 dispersed
Cmu10g1332 Cmu-Chr10:6243380 Cmu11g0220 Cmu-Chr11:2674381 9.50E-62 dispersed
Cmu10g1330 Cmu-Chr10:6217751 Cmu10g1332 Cmu-Chr10:6243380 8.10E-130 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g530 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00494 Cam10g0486 Cec10g0504 Cco10g0489 Clacu10g0505 Cmu10g1332 Cre10g0735 . . . . . Csa03g00500 . Cme06g02233 . . . . . . . . Sed04g0721 . . . Cma16g00898 . Car16g00874 . . Bhi11g00600 Tan01g1721 Cmetu06g0380 . Hepe07g1266 . . . . . . . . . . . Chy06g01826 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008029 0 2 0 0 0 2 1 2 2 1 2 2 1 1 2 1 2 0 1 2 2 1 2 0 2 1 1 2 1 0 36