Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1345 ATGACCCACTTTATCGAACCCAAATTCCACCAAACCCCATTTCCCCTTCTCCGCCGCACTCCCAAATCTCCACCGCCCATCTCAATCCGATGCGGCAGTGCCACCCGCGAGCTCCGATCCCGACTGGACTCCATCAAGAACACCCAGAAGCTCACCGAAGCCATGAAACTCGTCGCCGCCGCTAAAGTCCGACGAGCCCAAGAAGCCGTAATCAACAGCCGCCCCTTCTCCCAATCTCTCGCCCAATTTCTCCATTTCATCATCCAACAAATCCAACGAGACGACATCGATTTCCCCTTTATAAACCCTAGACCCGTCAGGAAAGTCGCCGTCGTCGTCTTCACCGGCGATCGAGGCCTCTGCGGGGGCTTCAACGCTTCGGTAATAAAAAAAGCTGAGACCCGATTGACCGAATTGAAAAACCTCGATCTGGGTCACACCCTAATCAGCGTCGGGAAAAAGGGCAATTCGCATTTCCGCCACCGGTCCGATGTTGAAGTCGATCGGTTCATCACCGGCTGCGGCGGCGTTTCAGTACCCACTGCAAAAGAAGCTCAAGCCATAGCAGATATTGTGTTTTCTCTGTTCATTAGCGAAGAAGTGGACAAAGTGGAAGTAATTTACACAAAATTCGTTTCGTTGCTGAAATCCGTGCCTGTGATTGAGACATTGCTGCCATTGTTGGGGGAAGGGGAAGCCATGGGAGATGGAGGGTTTAGATTGACGACGGCGGAGGGGAAATTGAAAGTGGAGAGAGAGGGAAAAAGGGGGAAATTAGGGGAAATTTCGCCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTTTGTATTTGAACAGCCAGGTTTTGAGGGCTTTGCAGGAATCTATGGCGAGTGAAGTAGCGGCGAGGATGAATGCAATGAGTAATGCTTCTGAGAATGCAATGGAGTTGAAGAAATCTGTTTCGGTTGCTTATAATCGAGAGAGACAGGCCAAGATTACTGGGGAGATTTTGGAAATCGTTGCTGGAGCTGAGGCTCTCGAGGGATTTTGA 1053 50.33 MTHFIEPKFHQTPFPLLRRTPKSPPPISIRCGSATRELRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAQFLHFIIQQIQRDDIDFPFINPRPVRKVAVVVFTGDRGLCGGFNASVIKKAETRLTELKNLDLGHTLISVGKKGNSHFRHRSDVEVDRFITGCGGVSVPTAKEAQAIADIVFSLFISEEVDKVEVIYTKFVSLLKSVPVIETLLPLLGEGEAMGDGGFRLTTAEGKLKVEREGKRGKLGEISPLLEFEQDPVQILDGMMALYLNSQVLRALQESMASEVAARMNAMSNASENAMELKKSVSVAYNRERQAKITGEILEIVAGAEALEGF 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6408510 6409562 - CmPI595203_10g013450.1 Cmu10g1345 426875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1345 350 NCBIfam ATP synthase F1 subunit gamma 35 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cmu10g1345 350 ProSitePatterns ATP synthase gamma subunit signature. 333 346 IPR023632 -
Cmu10g1345 350 Pfam ATP synthase 35 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cmu10g1345 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 33 102 - -
Cmu10g1345 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 245 347 - -
Cmu10g1345 350 PANTHER ATP SYNTHASE GAMMA CHAIN 29 347 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cmu10g1345 350 CDD F1-ATPase_gamma 35 344 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cmu10g1345 350 FunFam ATP synthase gamma chain, chloroplastic 244 347 - -
Cmu10g1345 350 PRINTS ATP synthase gamma subunit signature 294 313 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cmu10g1345 350 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cmu10g1345 350 PRINTS ATP synthase gamma subunit signature 202 219 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cmu10g1345 350 PRINTS ATP synthase gamma subunit signature 325 346 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cmu10g1345 350 Gene3D - 103 228 - -
Cmu10g1345 350 FunFam ATP synthase gamma chain, chloroplastic 33 100 - -
Cmu10g1345 350 FunFam ATP synthase gamma chain 99 228 - -
Cmu10g1345 350 Hamap ATP synthase gamma chain [atpG]. 32 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cmu10g1345 350 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 35 347 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2142 Cmu-Chr1:34102383 Cmu10g1345 Cmu-Chr10:6408510 1.00E-102 dispersed
Cmu04g1221 Cmu-Chr4:26700729 Cmu10g1345 Cmu-Chr10:6408510 7.90E-27 dispersed
Cmu10g1345 Cmu-Chr10:6408510 Cmu03g1071 Cmu-Chr3:5219345 2.50E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1345 K02115 - csv:101214682 609.757