Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1360 ATGAATTGCTTTCAATGTTGTATGTCAGAGGAGAAAGTCAATAGGAAGTCTTTGAAAAAGAGCATTAAAGAGTATCATGACACAAAAACTTTAGCCTCATTTGCCAACATTTCCTTTAAATCTGATAGCAGTCGGCGAAGGTACATAACTGAGGAGATAAAAAAGTTAGGAAAAGGAAACATCTCTGCTCAAATTTTTACATTTTGTGAGCTATCTACGGCTACAAATAACTTCAACCACGAAAATCTGTTGGGGGAAGGTGGTTTTGGAAGGGTTTACAAAGGCGTCATTGAAAGCACACAACAAATAACGGCCGTGAAGCAACTTGACCGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCTAATCTTGTGAATTTGGTTGGGTATTGTGCTGATGGGGATCAGAGAATTTTGGTTTATGAGTACATGGCTAAAGGTTCCTTGGAGGATCATCTTCTTGATATAGCATCAGATAAGCCACCTCTGGACTGGAAGACAAGGATGAAAATTGCCGAAGGAGCGGCAAAAGGACTTGAATACTTGCACGAAACTGCTAATCCTCCTGTGATATACCGTGATTTCAAAGCTTCAAACATATTGTTGGACGAGGAATTCAATCCAAAGCTCTCTGATTTTGGTCTTGCAAAGTTAGGTCCTACTGGGGACAAATCTCATGTTTCCACTAGGGTGATGGGAACCTATGGTTACTGTGCTCCTGAATATGCACTTACAGGACAATTGACGACGAAATCAGATGTCTATAGTTTTGGTGTTGTGTTTCTGGAGATTATAACTGGAAGAAGGGTTATAGACAATGCAAGACCAACAGCAGAACAAAATTTAATTACTTGGGCACAACCACTTTTCAAAGACAGAAGGAAATTTACCCTAATGGCAGATCCAAAGCTAGAAGGAAATTATCCAGTGAAGGCTCTGTATCAAGCTTTGGCAGTGGCAGCCATGTGTTTACAAGAGGAAGCGGGTACTCGACCATTGATCAGCGACGTGGTTACGGCCCTTGAATATTTAGCTGCAAACAAGGATGTCGATGCAGACGTAGATGATGAATCAGATTCAGGATCGGTATTGGGATCGGGATCAGATTCAGCTTCTCGTGATAGAAGTAGTAACAATGGAGATAAAAATGTTGATGTTGAGGGTGATGGGAGGTGA 1209 41.03 MNCFQCCMSEEKVNRKSLKKSIKEYHDTKTLASFANISFKSDSSRRRYITEEIKKLGKGNISAQIFTFCELSTATNNFNHENLLGEGGFGRVYKGVIESTQQITAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYEYMAKGSLEDHLLDIASDKPPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVAAMCLQEEAGTRPLISDVVTALEYLAANKDVDADVDDESDSGSVLGSGSDSASRDRSSNNGDKNVDVEGDGR 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6560225 6562985 + CmPI595203_10g013600.1 Cmu10g1360 426890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1360 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g1360 402 SUPERFAMILY Protein kinase-like (PK-like) 62 350 IPR011009 -
Cmu10g1360 402 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Cmu10g1360 402 FunFam Serine/threonine-protein kinase PBS1 155 370 - -
Cmu10g1360 402 Gene3D Phosphorylase Kinase; domain 1 38 154 - -
Cmu10g1360 402 PANTHER OS07G0668900 PROTEIN 30 368 - -
Cmu10g1360 402 CDD STKc_IRAK 84 353 - -
Cmu10g1360 402 MobiDBLite consensus disorder prediction 386 402 - -
Cmu10g1360 402 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524(InterPro)
Cmu10g1360 402 MobiDBLite consensus disorder prediction 363 402 - -
Cmu10g1360 402 Gene3D Transferase(Phosphotransferase) domain 1 155 374 - -
Cmu10g1360 402 Pfam Protein kinase domain 79 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1360 402 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1023 Cmu-Chr9:10316235 Cmu10g1360 Cmu-Chr10:6560225 5.50E-169 dispersed
Cmu10g1360 Cmu-Chr10:6560225 Cmu10g2786 Cmu-Chr10:34455541 1.70E-132 dispersed
Cmu10g1360 Cmu-Chr10:6560225 Cmu05g0647 Cmu-Chr5:5533543 3.30E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75832 PF00069 Pkinase 5.80E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1360 - - - 0.0