Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1383 ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTACCGGCTTTTCCTGGTCTATGACTCCCCTCAACGGCTCCGCCAATGTCAGCACGGAAATTGAAGGATCACTGCTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCGAAAGCCTGTAGGGAAAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTCGAATTGGGCGCTATTCTGGAGCCAGGTAGACCACCTAAGACCGACAAGGCTGCCATTTTGATCGATGCTGTCCGGATGGTCACTCAGTTACGTGGTGAAGCCCAGATGTTAAAGGATTCAAATGCAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAAAAGAATGAGCTTCGTGATGAGAAACAGAGGTTAAAAGTGGAGAAGGAGAAGTTGGAACAGCAACTAAAAGCCATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTGCCACTTTTGCTGCTCAAGGCCAAGCACCTGGAAACAAGTTGGTTCCTTTCATCGGCTACCCCGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCAGTCGACACCTCACAAGATCACGTACTCCGACCTCCTGTTGCTTAA 705 48.65 MVSPETTNWLFDYALMDDIPVSDANFSPPTTGFSWSMTPLNGSANVSTEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRMVTQLRGEAQMLKDSNASLSEKIKELKAEKNELRDEKQRLKVEKEKLEQQLKAMNSQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6867646 6870944 + CmPI595203_10g013830.1 Cmu10g1383 426913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1383 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983(InterPro)
Cmu10g1383 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Cmu10g1383 234 CDD bZIP 142 173 - -
Cmu10g1383 234 PANTHER BHLH TRANSCRIPTION FACTOR 7 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cmu10g1383 234 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Cmu10g1383 234 CDD bHLH_AtILR3_like 83 155 - -
Cmu10g1383 234 FunFam Transcription factor bHLH34 66 124 - -
Cmu10g1383 234 Gene3D - 77 152 IPR036638 GO:0046983(InterPro)
Cmu10g1383 234 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
Cmu10g1383 234 Coils Coil 123 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1136 Cmu-Chr2:23524227 Cmu10g1383 Cmu-Chr10:6867646 7.60E-08 dispersed
Cmu03g1114 Cmu-Chr3:5544064 Cmu10g1383 Cmu-Chr10:6867646 4.50E-56 dispersed
Cmu05g0468 Cmu-Chr5:3941868 Cmu10g1383 Cmu-Chr10:6867646 2.80E-28 dispersed
Cmu02g0850 Cmu-Chr2:10248634 Cmu10g1383 Cmu-Chr10:6867646 3.20E-60 transposed
Cmu06g1678 Cmu-Chr6:27856745 Cmu10g1383 Cmu-Chr10:6867646 2.60E-06 transposed
Cmu10g1383 Cmu-Chr10:6867646 Cmu05g1535 Cmu-Chr5:24033478 5.50E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6961 PF00010 HLH 1.10E-09 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1383 - - - 0.0