Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1407 ATGGCGGAGGAGTTTCAGAGCACTGGAAACTGGTGGGAGGCTTCTAGAAATCGCTACGAAGCCGGAATATCCCCTTCCTCCTCCTCCATCACCACCTTCGTCGACCACTCCGACTCCGCCGCCGCCGCCGCCGCCTCCGATCCCAATTTGCACATCATGGGCTTAGGCCTCGATTGGAATCAACCCCTCTTTAGGGGCGGCGGAGAGAAGGCGGCGGAGGGAAGTTTCCGGTCGATGCTACAGCCGGAAAATATGAATTTAAATATGCAAGAAACAGGGCAGCAGCAGCAGCAACAGATTCAATGGATGAGATCGGAGAAGCTATATTCAGGAGAGTCTCCGGCGACCGAATTTAAGGCAATAAACAGAGGATTTTCATTAGATCATCATCAAGCTCAACCCCAGTTCAGTAGCCCTTCTCACTACAGCTCCGGTGACAGTACCGTCACCAGTTTTCCGATCGACACCGCCGCCAATTTATACGGAAATTCCGCAACATTATTACAAGGCTTATTAGCCAGCGGCGGGGAGCAGCAGCAGCAACAGCAACAACAACAACAAGTCTCAGCGGCTGTAGGTATGAACTACCCTTACAATTCCCATTTCGGAATGAACTCCGGCGAGTTAATGGCGGGAGGAGCGTCGTGGTCGCCGTCTAAAGTGCCTCAGTTTTTAAGAAACTCACCGCCAAAAGGGGCGGCGGCGGCAACTCCACATAGTCAGTTACAATTTTCGAACAACACGGCGTTCTGGAACGCGTCGGATATGAAAGACGTGAGACCCAGTTATTTTCCGGCGTCGTACAACACCGCTGCAGGTTTCGCCGATAAATCAAAGAATATATCGGAGGTTGGTGATTCGGTAACAACAGTAGGAAAAAAAAGTGGAAATGATCACAATCAGCAATCCGCCGCTGCTAAAAGGCCTCGAAATGAAACTCCTTCGCCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTGTCTGAAGCAATTGAATACATAAAGTTCCTCCATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGCAGTACAGCAACAACATCAGCAGCAGAGATGTGAGAAATCAAAGGAAGGAGAAGGAGGAAAGCAAGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACTTTCAGATAA 1305 49.12 MAEEFQSTGNWWEASRNRYEAGISPSSSSITTFVDHSDSAAAAAASDPNLHIMGLGLDWNQPLFRGGGEKAAEGSFRSMLQPENMNLNMQETGQQQQQQIQWMRSEKLYSGESPATEFKAINRGFSLDHHQAQPQFSSPSHYSSGDSTVTSFPIDTAANLYGNSATLLQGLLASGGEQQQQQQQQQQVSAAVGMNYPYNSHFGMNSGELMAGGASWSPSKVPQFLRNSPPKGAAAATPHSQLQFSNNTAFWNASDMKDVRPSYFPASYNTAAGFADKSKNISEVGDSVTTVGKKSGNDHNQQSAAAKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAAVQQQHQQQRCEKSKEGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7613710 7617659 - CmPI595203_10g014070.1 Cmu10g1407 426937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1407 434 FunFam Transcription factor bHLH123 family 321 385 - -
Cmu10g1407 434 Gene3D - 321 391 IPR036638 GO:0046983(InterPro)
Cmu10g1407 434 SMART finulus 322 366 IPR011598 GO:0046983(InterPro)
Cmu10g1407 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 360 IPR011598 GO:0046983(InterPro)
Cmu10g1407 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 375 IPR036638 GO:0046983(InterPro)
Cmu10g1407 434 CDD bHLH_AtbHLH_like 317 368 IPR045239 -
Cmu10g1407 434 MobiDBLite consensus disorder prediction 288 317 - -
Cmu10g1407 434 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 101 413 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cmu10g1407 434 MobiDBLite consensus disorder prediction 288 309 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0690 Cmu-Chr2:7059493 Cmu10g1407 Cmu-Chr10:7613710 2.70E-26 dispersed
Cmu03g1130 Cmu-Chr3:5720871 Cmu10g1407 Cmu-Chr10:7613710 8.40E-38 dispersed
Cmu05g1922 Cmu-Chr5:29114421 Cmu10g1407 Cmu-Chr10:7613710 3.20E-26 dispersed
Cmu07g1293 Cmu-Chr7:28202699 Cmu10g1407 Cmu-Chr10:7613710 1.60E-23 dispersed
Cmu07g1503 Cmu-Chr7:30224700 Cmu10g1407 Cmu-Chr10:7613710 3.80E-25 dispersed
Cmu09g0182 Cmu-Chr9:1965068 Cmu10g1407 Cmu-Chr10:7613710 2.10E-21 dispersed
Cmu10g1407 Cmu-Chr10:7613710 Cmu11g0073 Cmu-Chr11:1311309 1.10E-28 dispersed
Cmu10g1407 Cmu-Chr10:7613710 Cmu01g2186 Cmu-Chr1:34364493 5.80E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1407 - - - 0.0