Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1411 ATGTCCCCAATCAAACCTCCACCACTAAACCGACCGGAGTTTCGAACAATGGCCATTAGAACCGCTTTCGAAAAAGCCGTCGAGGCTCAAAATTATGCAACCCGGTTTGGTCCGAGCTGTAAAACCACGCGCCAGAGAGCCGCGTGGACTGACTGTTTGAAGCTCTACAACGACGTCGTTTTCCAATTAAACCGTACCCTCCAATGCGTTCTTAGCGACGGAACAATCCAACGCCGCCGTTGTACGGATTTCGATGCGCAAACGTGGCTTAGCTCTGCTCTTACTGACATCGATTTGTGCCTCTCCGGCGCGGCGGATCTCAATGTGACGGATTTTATAGCTCCGATCAAATGCCAGAATGTTTCCAAGATGATTAGTAATTGCTTGGCCATTAATGGGGTATTTTTAAAAGAAGGGGTTAAAAGTGTAAATAGAATCGGAGTGGAGTTTGATCAAAATGGATCGTTTCCTATGTGGGTTTCGGATGGTGATCGGAAATTGTTGCAGTCGTCCGCTAAGGTGAGGGCTAATTTGGTGGTGGCGAAAGATGGGTCTGGGAAATTTCGGACGGTTCAGGCGGCGATCGATGCGGCGGCGAGGAGGCGTGGGAGGGGGCGATTTGTAATTTATGTAAAACGAGGGGTTTATAGAGAAAATATTGAAGTTGGGAATGATAATGGGAATTTAATGTTGGTGGGAGATGGGATGAGATTTACTGTGATTACAAGTGGAAGAAGCGTCGCCGCCGGCTTCACCACCTTCAGTTCTGCAACCGCTGGGATTCAAGGTCCAGGCTTCATCGCTCGAGACATAAGGTTCGTAAACACAGCCGGTCCACGAATGGGCCAAGCAGTTGCACTACGATCATCCTCGGACCTATCTGTGTTCCATCGATGCAGCTTCGAGGGCTACCAAGACACTCTAATGGTACTCTCACAAAGACAATTCTACAAACAATGTTACATTTACGGTACAATTGACTTCATCTTTGGGAACGCAGCAGTAGTTTTACAAAATTGCATGATTTACGTAAGGAGGCCTTTAAAGGGCCAAGTCAATGTCATAACTGCCCAAGGCCGAGAGGACCCGTTTCAGAACAGCGGAATCTCCATCCACAACTCTCAAATACGAGCCGCTGCTGATTTGCGGCCCATGATTGGCTCGGTTAAGACGTACATGGGTCGGCCCTGGAAGAAGTATTCGCGGACAGTCATTATGAGAAGCTACATTGATAGCTTGGTCAGCCCAGCCGGGTGGTTGGCGTGGCAAAAAAGTAAATTTGCTCAAGCTACGTTGTATTATGGGGAGTATCGTAATATTGGGCCTAGGGCTTCCACACGGTTTAGAGTCAAATGGCCGGGTTTTCATGTTATTAGAAGCCCAAATGTGGCTTCTAAGTTCACTGTCCAGAGACTCATCGCCGGCCAAACTTGGCTTCCGGCCACCGGAGTTCCCTTCAAGCTTGGCCTATGA 1473 48.54 MSPIKPPPLNRPEFRTMAIRTAFEKAVEAQNYATRFGPSCKTTRQRAAWTDCLKLYNDVVFQLNRTLQCVLSDGTIQRRRCTDFDAQTWLSSALTDIDLCLSGAADLNVTDFIAPIKCQNVSKMISNCLAINGVFLKEGVKSVNRIGVEFDQNGSFPMWVSDGDRKLLQSSAKVRANLVVAKDGSGKFRTVQAAIDAAARRRGRGRFVIYVKRGVYRENIEVGNDNGNLMLVGDGMRFTVITSGRSVAAGFTTFSSATAGIQGPGFIARDIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYIYGTIDFIFGNAAVVLQNCMIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLRPMIGSVKTYMGRPWKKYSRTVIMRSYIDSLVSPAGWLAWQKSKFAQATLYYGEYRNIGPRASTRFRVKWPGFHVIRSPNVASKFTVQRLIAGQTWLPATGVPFKLGL 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7896311 7899127 + CmPI595203_10g014110.1 Cmu10g1411 426941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1411 490 Gene3D - 171 490 IPR012334 -
Cmu10g1411 490 FunFam Pectinesterase 171 490 - -
Cmu10g1411 490 CDD PMEI-like_3 7 137 - -
Cmu10g1411 490 SUPERFAMILY Pectin lyase-like 174 489 IPR011050 -
Cmu10g1411 490 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 8 135 IPR035513 -
Cmu10g1411 490 SMART PMEI_2 2 131 IPR006501 GO:0004857(InterPro)
Cmu10g1411 490 ProSitePatterns Pectinesterase signature 1. 203 222 IPR018040 -
Cmu10g1411 490 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 134 IPR035513 -
Cmu10g1411 490 PANTHER PECTINESTERASE 20 481 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu10g1411 490 Pfam Plant invertase/pectin methylesterase inhibitor 12 131 IPR006501 GO:0004857(InterPro)
Cmu10g1411 490 ProSitePatterns Pectinesterase signature 2. 322 331 IPR033131 -
Cmu10g1411 490 NCBIfam pectinesterase inhibitor domain 9 133 IPR006501 GO:0004857(InterPro)
Cmu10g1411 490 Pfam Pectinesterase 177 475 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0821 Cmu-Chr5:7424347 Cmu10g1411 Cmu-Chr10:7896311 4.20E-154 dispersed
Cmu10g1411 Cmu-Chr10:7896311 Cmu11g1453 Cmu-Chr11:26756742 2.40E-91 dispersed
Cmu10g1411 Cmu-Chr10:7896311 Cmu01g0461 Cmu-Chr1:4746036 7.00E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1411 K01051 - csv:101213944 855.514