Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1426 ATGCCAACAGTTTGGTTGTCATTGAAGAAATCTTTGCACTGTAAGTCAGAGCCATCAGAAGTTCATGACCCAAAAAGTAGGAAGAATTTAGGAGCTATTTTGACAAGAAAAACAGGGGGCGGAGGAGGAGGAAGATCAGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGCGGCAGCAAAAGGCATTTGGATAAGCCTCCAAGTTGCAGTCCAAGATCCATTGGCAGCAGTGAGTTTCTTAACCCAATAACCCACGAAGTCATTCTCAGCAACTCAAGATGTGAGCTCAAAATCACCGGTTTTCATGGTGGTTTTCCCCAAGATCTTCCTGCCGCCGATCCTCACGGCGGCGCTAACGGCGCTTCCACCTTTGTTGGTACTCTCACACCGGGCACGCCCGGCCCCGGTGGCCACCCTTCAATGCATTACTTCAATCCTTCCTTGAGGTCTTCGAAAAAACTCCCTTTCAGAGAGGGATTTGGTAGCTCTAATAAATCTGGCGGCGGAGGAGCCCGCGGCGGAGTACATTCGAGCAATAGAATCTCTTTGGAAACAGAGAATAGTAGGAATGGATCTTCTGCTGCGGTTACTTGCCATAAATGTGGAGAGCAGTTCAATAAATGGGATGCTGCTGAAGCACATCATCTTTCTAAACATGCTGTGACTGAGCTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATAATTTGCAGGACAAGCTGGTTAAAGTCAGAGAATCAAAGTGGCAGAATAGAAAGAGTCCTAAAAGTTCACAATATGCAACGCACGCTAGCTCGATTCGAGGAGTATCGCGAGACGGTTAAGATCAAAGCGAGCAAGCTTCCAAAGAAGCACCCTCGGTGCCTTGCAGACGGGAACGAGCTCCTGCGATTCTACGGGACGACAGTGGCATGTTCGCTGGGTGTTAACGGCTCCTCCAGCCTATGCATATCAGAGAAATGCTGCGTTTGTAGGATCATACGTAACGGGTTCTCGGCAAAGACAGAGATGAAAGAAGGGATAGGCGTATTCACAACTTCGACGAGTGCGAGAGCATTCAACTCGATCGAGGCAGCAGGAGGGGACGAGACGATGAGGAGGAAAGCGATGATAGTTTGTAGGGTGATTGCAGGGAGAGTTCATAGGCCATTGGAGAACATACAAGAAATGGCTGGGCAGACAGGGTTTGATTCATTGGCAGGGAAAGTTGGGTTGCATTCAAATATAGAAGAGCTTTATTTGCTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAACCATGA 1308 47.55 MPTVWLSLKKSLHCKSEPSEVHDPKSRKNLGAILTRKTGGGGGGRSGCSRSIANLKDVIHGGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFHGGFPQDLPAADPHGGANGASTFVGTLTPGTPGPGGHPSMHYFNPSLRSSKKLPFREGFGSSNKSGGGGARGGVHSSNRISLETENSRNGSSAAVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVLKVHNMQRTLARFEEYRETVKIKASKLPKKHPRCLADGNELLRFYGTTVACSLGVNGSSSLCISEKCCVCRIIRNGFSAKTEMKEGIGVFTTSTSARAFNSIEAAGGDETMRRKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8413230 8414851 - CmPI595203_10g014260.1 Cmu10g1426 426956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1426 435 ProSitePatterns Zinc finger C2H2 type domain signature. 202 223 IPR013087 -
Cmu10g1426 435 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 434 - -
Cmu10g1426 435 MobiDBLite consensus disorder prediction 161 181 - -
Cmu10g1426 435 Gene3D - 225 434 - -
Cmu10g1426 435 SUPERFAMILY ADP-ribosylation 225 434 - -
Cmu10g1426 435 FunFam C2H2-like zinc finger protein 224 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2183 Cmu-Chr1:34340233 Cmu10g1426 Cmu-Chr10:8413230 2.40E-59 dispersed
Cmu01g0376 Cmu-Chr1:3963360 Cmu10g1426 Cmu-Chr10:8413230 1.30E-23 transposed
Cmu02g1966 Cmu-Chr2:33469953 Cmu10g1426 Cmu-Chr10:8413230 1.30E-46 transposed
Cmu03g1530 Cmu-Chr3:12350152 Cmu10g1426 Cmu-Chr10:8413230 7.10E-60 transposed
Cmu05g1879 Cmu-Chr5:28737487 Cmu10g1426 Cmu-Chr10:8413230 9.80E-54 transposed
Cmu10g1426 Cmu-Chr10:8413230 Cmu05g1541 Cmu-Chr5:24235898 1.20E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6962 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1426 - - - 0.0