Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1427 ATGGACTCTTTCTCTCCAGCATTTCTGGCCTTTAACTTTCTCCTTTATCTCTTCACCTATGTAGCTGCCACTGATTCCTTAACTGCTCAAAACCCATTTCTCAGAGATGGCTTTAGTCTGGTCTCCAAAAATGGAAATTTCGAATTGGGTTTCTTCAGTCCTGGTCTTTCGAGAGACCGTTACTTGGGAATTTGGTTCAAGAATCGGCGAGGTCCGACCTCTGTTTGGGTTGCGAATAGGAAAACGCCAATTAATGACTCATCTGGTGTACTGATGATGAACCTTACACCAGGAAATCTTATACTCTATAGCCATAATTCCACCGCCACCATTGTTTGGTCCGCCAGGTTGCTGAGAAAAGTCCCCAATGGGGTACTCCAATTATTGGACACTGGAAATCTTGTGCTGAGAGATAGGGAAGATGAAAATCCCCAAAACTACTCGTGGCAAAGTTTTGATTACCCTACTGACACTCTTTTGCCTGGAATGAAGCTGGGTTGGGACTTGAGAAATAACATAAATAGAAGATTAGATGCTTGGAAAAATCCCAATGACCCATCTCCTGGAAACCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAGTCTGTCATGTGGAAAGGTTCCCAAGAATACTTCAGGCATGGCCCATGGAATGGTATGAGAGTCACTAGTAGACCACTGGGTATTGCACCAATTCTGAACTTCAACTTTGTTTCAAATGAAGATGAAGTTTACTACCAATACTCTGTTGTTAATAAGTCTCATACAGTGATGGTGGTGATGAACCAATCCAATTACCTGCGCATAATGTACTTATGGTCTGCAGCTGAGAGACAGTGGAGACTTTACACTTCATTGCCAAGAGATTTCTGTGACAATTATGCCCTGTGTGGCCCTTATGGGTATTGTGATATAAGGGTAACTCCATCTTGTAAATGTCTAGAAGGGTTTAAGCCAAGATCACCTGATAGTTGGACGGCAGGGGAATTTGCGGATGGTTGTGAACGAAACAAACTGATGAACTGTGGTGATGAAGTTGGGTTTGCACAGCTCAACCAGCTGAAATTGCCAGACACAAAGCATACTTGGGTAAACAAAAGCATGAATCTTGAGGAGTGCAGGCAAAAATGCTTGAGAAATTGCTCTTGTATGGCTTATGCAAATACAAATATCAGTGGGAGTGGCAGTGGCTGTGCCTTGTGGATTGGTGATCTAATTGACTTGAAATTGATCCCGGACGCAGGACAAGATTTATATGTCAAAATGCTTGTATCAGAATTAGTCAAGCGTAGGGAGGCACACAAAACTGAAAGATTGAATCCTAAGGTGAAGATATCTTTGGTTGTGATTGTTGCCAGTTTCAGTTTGGCTATCCTCTTCATATGCTTATACACTTTCAAAAAGAGATCAACCGTCAAAGATGACCATGAGAAAATAGAAGCTCAAGATCTGGAGCTTCCCTTATTTGATCTATCCTTGATAAATAGTGCCACAAATAACTTCTCGATTGATAATAAGTTGGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATGTTGCAGTGAAGAGACTTTCACGGAGTTCTGGACAGGGAATGAACGAGTTTAAGAATGAAGTAATCCTGATTGCAAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGCTGCATTCAAGGAGAAGAGAAAATGTTAGTTTATGAGTACATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATCGAACACAACGTCAGTTATTAGACTGGTCACAACGATACCACATTATTTGTGGAATTGCTAGAGGACTCATGTATCTTCATCAAGATTCTCGATTGAGGATTATACATAGAGATTTAAAAGCTAGTAATGTGTTACTTGATATGGATATGAATCCGAAAATCTCTGATTTTGGTTTGGCTAAAACTTGCGGTGGAGATCAAACTGAAGGACGAACGATAAAAGTGGTCGGAACTTACGGATATATGGCACCTGAATATGCTTTTGATGGACGATTCTCAGTAAAATCTGATGCTTTTAGTTATGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGCAGAAGTTTCTGCCACTTGAATGACCAAAATCTCATTGCATATGCCTGGCGATTGTGGAAAGAAGGAAATCCAGAGGAATTGATTGACAACGCCATTCGAGAAACATGCATTATTTCGGAGGTATTGAGATGTATCAATATCAGTTTGTTGTGTGTCCAACAACATCCTAACGATCGACCCACAATGTCATCGGTGGTTATGATGTTAGGCTGTGAAATTCCTTTGTCGCAACCAAAACAACCCGGATTTTTCGTAGAAAATGAAGCCATTGCAATGAAGAGTGGCTCAAGTAAAGACAAATCAACTTCAACTAATGAATTAACTATTACACTCCCAGATCCAAGGCGCAAAGAAGTTTCCAACTACTCCATGGATTTTCTTCTTGATCTCTTTGAACACCAAATTCCCTATTTCTGCAAATTTGGGAATGAAGACCAAGGTAAAGGCCAAAGTACCGATTCTTATAGTACTGTTCGAGGAGTCGATAAGTTAATTCCTGTCGATGTGTATTTGCCGGGTTGTTCACCTAAACCCGAGGCTATTATAGATGCTATAACAAAACTTCGTAAGAAAATATCTCGAGAAATCTATGAAGATCGAATTAAGTCTCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATATGAAACTAATCAAGCTCTGTTTAATCTCCTAGAAGCGGAAGCTGAATTAGTTGTAGGCTATAATGTAGAATATGCGCGGGATGTGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCTGGGGCTCCAGGTTAGAGACATGTCACTTAGTTTGGGGGCCTTCCTTATTGACTGA 2937 40.69 MDSFSPAFLAFNFLLYLFTYVAATDSLTAQNPFLRDGFSLVSKNGNFELGFFSPGLSRDRYLGIWFKNRRGPTSVWVANRKTPINDSSGVLMMNLTPGNLILYSHNSTATIVWSARLLRKVPNGVLQLLDTGNLVLRDREDENPQNYSWQSFDYPTDTLLPGMKLGWDLRNNINRRLDAWKNPNDPSPGNLSWRMELHEYPESVMWKGSQEYFRHGPWNGMRVTSRPLGIAPILNFNFVSNEDEVYYQYSVVNKSHTVMVVMNQSNYLRIMYLWSAAERQWRLYTSLPRDFCDNYALCGPYGYCDIRVTPSCKCLEGFKPRSPDSWTAGEFADGCERNKLMNCGDEVGFAQLNQLKLPDTKHTWVNKSMNLEECRQKCLRNCSCMAYANTNISGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLVSELVKRREAHKTERLNPKVKISLVVIVASFSLAILFICLYTFKKRSTVKDDHEKIEAQDLELPLFDLSLINSATNNFSIDNKLGEGGFGPVYKGKLTNGQDVAVKRLSRSSGQGMNEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLVYEYMPNKSLDFFIFDRTQRQLLDWSQRYHIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGRTIKVVGTYGYMAPEYAFDGRFSVKSDAFSYGILLLEIISGKRSRSFCHLNDQNLIAYAWRLWKEGNPEELIDNAIRETCIISEVLRCINISLLCVQQHPNDRPTMSSVVMMLGCEIPLSQPKQPGFFVENEAIAMKSGSSKDKSTSTNELTITLPDPRRKEVSNYSMDFLLDLFEHQIPYFCKFGNEDQGKGQSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKSPVIRVRLSWRKSRYETNQALFNLLEAEAELVVGYNVEYARDVILNSPLLAEANVLGLQVRDMSLSLGAFLID 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8419970 8431889 - CmPI595203_10g014270.1 Cmu10g1427 426957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1427 978 Gene3D Transferase(Phosphotransferase) domain 1 578 779 - -
Cmu10g1427 978 SMART serkin_6 502 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1427 978 SUPERFAMILY HydA/Nqo6-like 852 902 - -
Cmu10g1427 978 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 577 - -
Cmu10g1427 978 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 857 891 IPR006137 GO:0051536(InterPro)
Cmu10g1427 978 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 786 - -
Cmu10g1427 978 Gene3D - 19 152 IPR036426 -
Cmu10g1427 978 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544(InterPro)
Cmu10g1427 978 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 780 - -
Cmu10g1427 978 ProSiteProfiles Bulb-type lectin domain profile. 25 149 IPR001480 -
Cmu10g1427 978 CDD PAN_AP_plant 341 422 - -
Cmu10g1427 978 Pfam Protein tyrosine and serine/threonine kinase 503 771 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g1427 978 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 186 IPR036426 -
Cmu10g1427 978 Gene3D - 840 919 - -
Cmu10g1427 978 SUPERFAMILY Protein kinase-like (PK-like) 487 781 IPR011009 -
Cmu10g1427 978 SMART ntp_6 344 423 IPR003609 -
Cmu10g1427 978 CDD STKc_IRAK 508 772 - -
Cmu10g1427 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g1427 978 ProSiteProfiles Protein kinase domain profile. 502 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1427 978 Pfam D-mannose binding lectin 73 181 IPR001480 -
Cmu10g1427 978 Pfam PAN-like domain 344 409 IPR003609 -
Cmu10g1427 978 SMART blect_4 31 155 IPR001480 -
Cmu10g1427 978 CDD B_lectin 34 155 IPR001480 -
Cmu10g1427 978 ProSiteProfiles PAN/Apple domain profile. 343 424 IPR003609 -
Cmu10g1427 978 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 152 - -
Cmu10g1427 978 Gene3D Phosphorylase Kinase; domain 1 464 577 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1140 Cmu-Chr3:5840411 Cmu10g1427 Cmu-Chr10:8419970 1.20E-178 dispersed
Cmu03g1141 Cmu-Chr3:5852562 Cmu10g1427 Cmu-Chr10:8419970 2.50E-158 dispersed
Cmu03g1146 Cmu-Chr3:5896300 Cmu10g1427 Cmu-Chr10:8419970 2.30E-23 dispersed
Cmu05g1817 Cmu-Chr5:28292724 Cmu10g1427 Cmu-Chr10:8419970 9.80E-10 dispersed
Cmu07g0637 Cmu-Chr7:9619270 Cmu10g1427 Cmu-Chr10:8419970 1.60E-80 dispersed
Cmu10g1427 Cmu-Chr10:8419970 Cmu09g0202 Cmu-Chr9:2101377 2.30E-122 dispersed
Cmu10g1427 Cmu-Chr10:8419970 Cmu10g1428 Cmu-Chr10:8440837 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75834 PF07714 PK_Tyr_Ser-Thr 1.90E-49 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1427 - - - 0.0