Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1428 ATGGACTCTTTCTTCTCAACACTCGTTGCCTTTAACTTAGTCTTTCTTCTCTTCAGGTCTCTTGCTGTCTCCGATTCCTTAACGGCTCAAAACCCGTATCTCAGAGATGGCCTTACTCTGGTCTCTAGAAATGGAATCTTCGAATTGGGTTTCTTCAGTCCTGGACTTCCCGCCAACCGTTACTTGGGAATCTGGTTCAAGAATCGGCGAGGTCCGACCTCTGTTTGGGTTGCGAACAGGAAAACCCCCATTAATGATTCGTCTGGTGTACTGGTGATGAACATTACAACAGGAAACCTTACACTCTACAGCCATAATTCCACTGCCATTGTTTGGTCTGCCAGGTTACTGAGAAAAGTCCCCAACGGGGTACTCCAACTATTGGACACTGGAAATCTTGTGCTGAGGAATAGGGAAGATGAAGATCCGCGAAACTATTCCTGGCAAAGCTTTGATTACCCTACTGACACTCTCTTGCCTGGAATGAAGCTAGGTTGGGACTTGAGAAATAACATAGAAAGAAGATTAGAGGCTTGGAAGAATCTCAATGATCCATCTCCTGGAGACCTCAGTTGGAGGATGGAGCTTCATCAATATCCCGAGACTGTCATGTGGAATGGTTCCAAAAAGTACGTCAGGCATGGCCCATGGAATGGTGTGAGACTCAGTAGTAGACCACTAGCTGCAGCGCCAATTTTGAACTTCAACTTTGTTTCAAATGAGGATGAGGTTTACTACCAATACTCTGTTGTAAATAAGTCTCATTCAGTGATGTTGGTGATGAACCAATCCAATTATGTGCGCATATTGTACTTGTGGTCTGCAGCTGAAAGACGATGGAGAGTTTACACTTCATTACCAAGAGATAACTGTGACAATTATGCCCTGTGTGGCCCCTATGGATATTGTGATATAAGAGTCACCCCATCTTGTTTATGTCTAGAAGGGTTCAAGCCAAGATCACCTGATAGTTGGGAGGCCGGGGAATTTGCAGACGGTTGTGAACGAAACAAACTGATGAACTGTGGTGATGAAGTTGGGTTTGCACAGCTCAACCAGTTGAAATTGCCAGACACTAAGTATACTTGGGTCAACAAAAGCATGAATCTTGAGGAGTGCAAGCAAAAATGCTTGAGAAATTGTTCGTGTATGGCTTATGCAGTGACAAATGTCAGTGGCAGTGGCAGTGGCTGTGCCTTGTGGATTGGTGATCTAATTGACTTGAAACTGATCCCGGACGCAGGACAGGATTTATATGTCAAAATGCTGGCATCAGAATTAGTCAAGCATGGGGAGGCACACAAAACTGAAAGATTGAATCCTAAGGTGAAGATTGCTTTGTTTGTGATTTCCGGTTTAGGTTTGGCTATCCTCTTCATAGGCATAGGCGTATACATTTTCAAGAAGCGATCAACCTTCAAAGATGAACAAGAGAAAATAGAAGATCAAGACCTAGAGCTTCCCTTGTTTGATCTATCCTTGATTAATAGTGCCACAGATAACTTCTCACATAATAATAAGCTAGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATGTTGCAGTGAAGAGACTTTCACAGAGTTCTGGACAAGGAACGAATGAGTTTAAGAATGAAGTGATCCTGATCGCAAAACTGCAACATCGAAACCTTGTAAAGCTTCTTGGTTGCTGCATTCAAGGAGATGAGAAAATGCTAGTTTATGAGTATATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATCAAACACAACGTCAATTATTAAATTGGTCAAAACGGTACCGAATTATTTGTGGAGTTGCTAGAGGACTCATGTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATTTAAAAGCAAGTAATGTTTTACTAGATATGGATATGAATCCAAAAATCTCTGATTTTGGACTGGCTAAAACTTGTGGTGGGGATCAAACTGGAGGAAGAACCTTAAGAGTGGTCGGAACTTACGGATATATGGCACCAGAGTATGCTTTTGATGGACAATTCTCGGTGAAATCTGATGCTTTTAGTTATGGCATTTTGCTGCTGGAGATCATTAGTGGGAAAAGAAGTAGAACTTTCTGCCATTTGAATGACCAAAATCTAATAGCATATGCATGGCGATTGTGGAAAGAAGGAAATATAGAAGAATTGATCGACGATGCCATTCGAGAAACATGCAGCCTTTCGGAGGTACTGAGATGTATCAATATCAGTTTGTTGTGTGTTCAACAACATCCAAATGATCGACCCACAATGTCATTGGTGGTTATGATGTTAGGTTGTGAAATTCCTTTGTCGCAACCGAAACAACCCGGATTTTTCATAGAAAATGAAAAAGCCATTGCAATGAAAAGAGGCTCAAGTAAAGATAAATCAACTTCAACTAATGAATTGACTATTACGCTCCCAGATCCGAGGTAA 2460 41.42 MDSFFSTLVAFNLVFLLFRSLAVSDSLTAQNPYLRDGLTLVSRNGIFELGFFSPGLPANRYLGIWFKNRRGPTSVWVANRKTPINDSSGVLVMNITTGNLTLYSHNSTAIVWSARLLRKVPNGVLQLLDTGNLVLRNREDEDPRNYSWQSFDYPTDTLLPGMKLGWDLRNNIERRLEAWKNLNDPSPGDLSWRMELHQYPETVMWNGSKKYVRHGPWNGVRLSSRPLAAAPILNFNFVSNEDEVYYQYSVVNKSHSVMLVMNQSNYVRILYLWSAAERRWRVYTSLPRDNCDNYALCGPYGYCDIRVTPSCLCLEGFKPRSPDSWEAGEFADGCERNKLMNCGDEVGFAQLNQLKLPDTKYTWVNKSMNLEECKQKCLRNCSCMAYAVTNVSGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLASELVKHGEAHKTERLNPKVKIALFVISGLGLAILFIGIGVYIFKKRSTFKDEQEKIEDQDLELPLFDLSLINSATDNFSHNNKLGEGGFGPVYKGKLTNGQDVAVKRLSQSSGQGTNEFKNEVILIAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLDFFIFDQTQRQLLNWSKRYRIICGVARGLMYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTGGRTLRVVGTYGYMAPEYAFDGQFSVKSDAFSYGILLLEIISGKRSRTFCHLNDQNLIAYAWRLWKEGNIEELIDDAIRETCSLSEVLRCINISLLCVQQHPNDRPTMSLVVMMLGCEIPLSQPKQPGFFIENEKAIAMKRGSSKDKSTSTNELTITLPDPR 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8440837 8444203 - CmPI595203_10g014280.1 Cmu10g1428 426958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1428 819 Pfam Protein tyrosine and serine/threonine kinase 505 770 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g1428 819 Gene3D Phosphorylase Kinase; domain 1 464 577 - -
Cmu10g1428 819 CDD B_lectin 33 154 IPR001480 -
Cmu10g1428 819 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544(InterPro)
Cmu10g1428 819 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 22 786 - -
Cmu10g1428 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 577 - -
Cmu10g1428 819 SMART blect_4 31 154 IPR001480 -
Cmu10g1428 819 SUPERFAMILY Protein kinase-like (PK-like) 484 772 IPR011009 -
Cmu10g1428 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 780 - -
Cmu10g1428 819 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
Cmu10g1428 819 Gene3D - 20 151 IPR036426 -
Cmu10g1428 819 MobiDBLite consensus disorder prediction 798 819 - -
Cmu10g1428 819 Gene3D Hepatocyte Growth Factor 339 418 - -
Cmu10g1428 819 CDD STKc_IRAK 508 772 - -
Cmu10g1428 819 Pfam D-mannose binding lectin 73 180 IPR001480 -
Cmu10g1428 819 MobiDBLite consensus disorder prediction 800 819 - -
Cmu10g1428 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g1428 819 CDD PAN_AP_plant 340 421 - -
Cmu10g1428 819 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Cmu10g1428 819 SMART serkin_6 502 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1428 819 PIRSF SRK 1 819 IPR024171 GO:0004674(InterPro)
Cmu10g1428 819 ProSiteProfiles Protein kinase domain profile. 502 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1428 819 SMART ntp_6 343 422 IPR003609 -
Cmu10g1428 819 Pfam PAN-like domain 343 408 IPR003609 -
Cmu10g1428 819 Gene3D Transferase(Phosphotransferase) domain 1 578 779 - -
Cmu10g1428 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1559 Cmu-Chr5:24840014 Cmu10g1428 Cmu-Chr10:8440837 7.30E-271 dispersed
Cmu10g1428 Cmu-Chr10:8440837 Cmu09g0202 Cmu-Chr9:2101377 5.90E-119 dispersed
Cmu10g1427 Cmu-Chr10:8419970 Cmu10g1428 Cmu-Chr10:8440837 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75835 PF07714 PK_Tyr_Ser-Thr 1.90E-49 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1428 - - - 0.0