Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1474 ATGGCAGACATCGAGTCTCAAACCAACAACACAGTCTTTATAGGCAAAGCAAATCGCCCACTCACATTAATGTTCGAGGACGTGAGTTACAAGATTAAACCCAAGAACTCAAAATCCGAAGAGATGAAAACGATTTTAAAAGGAATAAAAGGAGTGGTCCGTCCAGGTGAGATGTTAGCTATGATGGGCCCATCAGGCTCGGGCAAGACCACACTCTTGACAGCTTTAGGAGGCCGGCTAAGCAGCGGCAGTGTTGGTGGCGGTCGACTAACCGGAACCATTACCTACAACAACAAACCCTTCTCAAACAAAATGAAAAGAAACATTGGGTTTGTTGCACAAGATGACATTCTTCTTCCCCATTTGACAGTGTTGGAAACCCTTGTTTTCACTGCTCTACTAAGGCTTCCGAATGAGTTGACGGCGCAACAGAAAGCAGCTCAAGCTGAGGTGGTTATTTCGCAGCTAGGGCTTAGTAAGTGCAAGAACAGTGTGGTGGGGAGTCAGATGGTGAGAGGAGTTTCTGGGGGAGAGAGGAAAAGGGTTAGTATTGCTCAAGAAATGCTTATAAACCCTAGTTTATTGTTTCTTGATGAACCCACTTCGGGTCTTGACTCAACTACGGCTCAGAGGATTGTTTCAACTCTTTGGGAGGTTGCTAATAATGGTGGGAGGACTGTGGTGATGACTATTCATCAGCCCTCTAGTAGACTTTTTTATATGTTTCACAAGATTTTATTGCTTTCTGAAGGCAATACTATGTACTTTGGGAAGGGATCAGAAGCTATGGATTATTTCTCCACTCTTGGTTATGCTCCTTCTGTGCCTATGAACCCTTCTGATTTCTTGTTGGATCTTGCTAATGGTTTGTCAATGAATGATCCAGAAGAGGAGGCAGCCATGGTTAAGGAGAAACTTGTAACATCTTACAAGAACAATAATATAGCTGAAAATTTGATGTTAGAGGTACAAGAAAGTGATGAGAATTTGGTTGAGGATGGATCAGAGGAAAAGAGTTATGGACGTTGGTCAACAACTTGGTGCCAACAATTCTCTGTGCTGTTGAGAAGAGGAATTAAGGAAAGAAAGCATGACTCTTTTTCTGGACTCAAGATTGGCCAAGTTTTAGCTGTTGCTATCATGAGTGGACTCTTATGGTGGCAATCTGATGATTCACATTTACAAGATAAGATTGGACTGTTCTACTTCTCCTCAAGCTTCTGGGGTTTCTACCCTCTATTACAAGCCATCAGCACCTTCCCAAAAGAAAGAATGATTCTTGAAAAGGAAAGATCCTCAGGAATGTACAGGCTCTCATCCTACTTCATCTCAAGAACCACAAGCGACCTCCCAATGGAACTCGTCCTTCCCACCGTCTTTATCATCATAATCTACGTGATGGCGGGGTTGAAACGCACGGCGACAAGCTTCTTTGCCACTCTATTTTCTCAACTCCTAAGTGTTTTGGTGGCCCAAGGGTTTGGCCTGGCCATTGGAGCCCTTGTTTTGGACCAAACTTCAGCCACTATACTTGGATCAGTCATCATGCTTTGTTTCCTATTGACATCAGGCTATATTGTTCAGCATGTGCCAAAGTTTATTTCTTGGACTAAATACATTTCTGTTGGTACTTATAGTTACAAGCTTTTGTTGATATCTCAATTTAAAGCTACTGATACTTATACATGCAGCAATGATGGAGGAAGGGTATGTGAAGTTGGAGAGTTCCCTGCAATTAAACTAGTAGGTCTTGATGGGAAACTCACTGCTGTGTTGGCTTTGGTTGCTATGCTTATTGGATATCGTCTTGTTGCTTACATTGCTTTGATGAGGATTGGTGTCACCAAGAGGAGCTAG 1857 42.76 MADIESQTNNTVFIGKANRPLTLMFEDVSYKIKPKNSKSEEMKTILKGIKGVVRPGEMLAMMGPSGSGKTTLLTALGGRLSSGSVGGGRLTGTITYNNKPFSNKMKRNIGFVAQDDILLPHLTVLETLVFTALLRLPNELTAQQKAAQAEVVISQLGLSKCKNSVVGSQMVRGVSGGERKRVSIAQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWEVANNGGRTVVMTIHQPSSRLFYMFHKILLLSEGNTMYFGKGSEAMDYFSTLGYAPSVPMNPSDFLLDLANGLSMNDPEEEAAMVKEKLVTSYKNNNIAENLMLEVQESDENLVEDGSEEKSYGRWSTTWCQQFSVLLRRGIKERKHDSFSGLKIGQVLAVAIMSGLLWWQSDDSHLQDKIGLFYFSSSFWGFYPLLQAISTFPKERMILEKERSSGMYRLSSYFISRTTSDLPMELVLPTVFIIIIYVMAGLKRTATSFFATLFSQLLSVLVAQGFGLAIGALVLDQTSATILGSVIMLCFLLTSGYIVQHVPKFISWTKYISVGTYSYKLLLISQFKATDTYTCSNDGGRVCEVGEFPAIKLVGLDGKLTAVLALVAMLIGYRLVAYIALMRIGVTKRS 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9582393 9585635 - CmPI595203_10g014740.1 Cmu10g1474 427004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1474 618 Pfam ABC-2 type transporter 349 555 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cmu10g1474 618 Gene3D - 22 269 IPR027417 -
Cmu10g1474 618 Pfam ABC transporter 46 202 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu10g1474 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 269 IPR027417 -
Cmu10g1474 618 Pfam ABC-2 type transporter 232 299 IPR043926 GO:0140359(InterPro)
Cmu10g1474 618 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu10g1474 618 FunFam ABC transporter G family member 22 33 269 - -
Cmu10g1474 618 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 23 275 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu10g1474 618 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 22 606 IPR050352 GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cmu10g1474 618 SMART AAA_5 55 252 IPR003593 GO:0016887(InterPro)
Cmu10g1474 618 CDD ABCG_EPDR 20 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1474 K05681 - - csv:101213406 1051.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0849 Cmu-Chr6:11083941 Cmu10g1474 Cmu-Chr10:9582393 2.60E-173 dispersed
Cmu07g1092 Cmu-Chr7:25883060 Cmu10g1474 Cmu-Chr10:9582393 2.30E-174 dispersed
Cmu08g0707 Cmu-Chr8:19392236 Cmu10g1474 Cmu-Chr10:9582393 1.80E-51 dispersed
Cmu10g1474 Cmu-Chr10:9582393 Cmu10g2797 Cmu-Chr10:34524354 4.40E-66 dispersed
Cmu10g1474 Cmu-Chr10:9582393 Cmu10g1476 Cmu-Chr10:9603784 4.60E-233 proximal
Cmu03g0887 Cmu-Chr3:3383992 Cmu10g1474 Cmu-Chr10:9582393 1.60E-36 transposed
Cmu05g2274 Cmu-Chr5:32123573 Cmu10g1474 Cmu-Chr10:9582393 5.00E-78 transposed
Cmu10g1259 Cmu-Chr10:5485233 Cmu10g1474 Cmu-Chr10:9582393 3.20E-126 transposed
Cmu10g2532 Cmu-Chr10:32047573 Cmu10g1474 Cmu-Chr10:9582393 4.70E-155 transposed
Cmu10g1474 Cmu-Chr10:9582393 Cmu11g0780 Cmu-Chr11:8335942 6.90E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g270 . . . . . . . . Cmo16g00851 . . . . . . . . . . . . . . . Cla10g00629 Cam10g0620 Cec10g0650 Cco10g0625 Clacu10g0651 Cmu10g1474 Cre10g0861 . . Cone14ag1077 . . Csa03g00613 . . . . . . . . . . . . . . . . . Cpe14g00687 . . . . . . . . . . . . . . . Lsi05g00704 . Chy06g01711 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003135 1 2 2 2 2 2 0 2 2 2 2 2 3 2 2 1 2 2 1 2 2 2 1 0 3 1 2 1 2 1 51