Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1493 ATGGTCAAGTTAATTTGGAATTTAAGTTCGAGTTGGGTACAAGTACAAGATCCAAATCCAAATCCGACTTACGACGTAAATAATGGGAGGACGGCACCTGTCACCCACGTGCTAGAGTTCTATTGGTCTGTGTTTGAACTTGTATCAACGTCACGGTACGCCAGTCCCCAGCATCCTCATCCATTCGTCCTCCATTCATTGCCACATCAAACCAAAACCCCGAATTTCCCCAATTTTGCCCAAACTTCTCACTCGCAAGTCGCAACCACCATCACCCATCAATCCCTTCCTCCGATGGCTACGGTTCTCGATTCCCTCACTCTTCCCTGTTCCTCCGCCTTGGCTTCCACCGCTTTCTCCGGCCGTCGGAGTTCCGTCGCTCTCCCGCAGTGCAGAGGCTTGAAGATCGCTCACAGCTTCACTTCCCACTCTATAAGATCTGCCAGATCTAATGCTAGATTTACTCAGCGTTCGGCAACTATCGTTTGCGAAGCTCAGGAAACTGCTGCCATTGTACCTGCTGCTTCAGAAGCTACCTGGAAGTCACTGGTTATAGAATCTAAATTACCCGTACTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGCATGATTCATCCAATCATTGATGACCTATCTAAAGAGTACGCTGGAAAGTTCAAATTTTACAAGGTGGATACCGATAACAACTCTTCAATTGCATCCCAATATGGTATTAGAAGCATACCTACAGTCATTATCTTCAAAGATGAGATGGCTGATATAAAATTAGGCAAGTTTCTGAAGCAGCTGCATTAG 801 46.57 MVKLIWNLSSSWVQVQDPNPNPTYDVNNGRTAPVTHVLEFYWSVFELVSTSRYASPQHPHPFVLHSLPHQTKTPNFPNFAQTSHSQVATTITHQSLPPMATVLDSLTLPCSSALASTAFSGRRSSVALPQCRGLKIAHSFTSHSIRSARSNARFTQRSATIVCEAQETAAIVPAASEATWKSLVIESKLPVLVEFWAPWCGPCRMIHPIIDDLSKEYAGKFKFYKVDTDNNSSIASQYGIRSIPTVIIFKDEMADIKLGKFLKQLH 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9952741 9955681 - CmPI595203_10g014930.1 Cmu10g1493 427023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1493 266 NCBIfam thioredoxin 176 252 IPR005746 GO:0015035(InterPro)
Cmu10g1493 266 ProSitePatterns Thioredoxin family active site. 192 210 IPR017937 -
Cmu10g1493 266 Pfam Thioredoxin 175 253 IPR013766 -
Cmu10g1493 266 FunFam Thioredoxin 166 263 - -
Cmu10g1493 266 CDD TRX_family 178 251 - -
Cmu10g1493 266 Gene3D Glutaredoxin 160 264 - -
Cmu10g1493 266 PRINTS Thioredoxin family signature 191 199 - -
Cmu10g1493 266 PRINTS Thioredoxin family signature 199 208 - -
Cmu10g1493 266 PRINTS Thioredoxin family signature 239 250 - -
Cmu10g1493 266 SUPERFAMILY Thioredoxin-like 172 252 IPR036249 -
Cmu10g1493 266 PANTHER GEO12009P1 147 251 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Cmu10g1493 266 ProSiteProfiles Thioredoxin domain profile. 159 266 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1493 K03671 - - csv:101204508 278.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0593 Cmu-Chr8:18094813 Cmu10g1493 Cmu-Chr10:9952741 4.90E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g240 . . . . . . Bma10g00502 . Cmo16g00845 Cmo04g00973 . . . . . . . . . . . . . . Cla10g00647 Cam10g0643 Cec10g0664 Cco10g0639 Clacu10g0666 Cmu10g1493 Cre10g0874 . . Cone14ag1070 Cone15ag1059 . Csa03g00627 . . . . . Bda12g00865 . Bpe03g00834 . . . . . Cma04g00906 Cma16g00782 Car04g00849 . Cpe14g00681 . . . . . . . . . . . . . . . Lsi05g00715 . Chy06g01700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004200 2 2 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 43