Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu10g1538 | ATGTCCACAACAAAGCTTCTTGCCCATACCTTTGACCCAATCGATGAGAATCACGACAACGACCGCGAAATTGAAGCCTCTGAGAGGCTCGTCGGATCGCCATTTACTGAGGATAGAGATTCTGTTTCCCTCACCCTAGGCGAGCCCCTCTTGCGTACCAGTGTCGCCAGGGTCAGTACCACCTCCCAGCTCGCCATTGTTGGTTCTAATATCTGTCCTATTGAGAGCCTCGACTACGAGATTATCGAGAATGAACTTTTCAAGCAGGATTGGAGGTCCAGAAAAAAGCTCGAGATATTTCAGTATATCATCCTCAAATGGACATTGTGCCTTTTCATCGGTTTAATTACAGGGCTTGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCCGGTCACAAACTTCTCCTGACAAATAATCTCATGCTCAAGGAAAAGTACTTTCAGGCATTTGCAGTATACGTTGCTTCCAATAGTGCTTTAGCTGCTGCTGCTGCAATCCTCTGTGCCTATATTGCCCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTCAACGGTATAGATGCTTATTCTATATTGGCTCCGAGTACCTTATTTGTGAAGATTTTTGGTTCAATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGTGCATGCATTGCCTCGTTACTGGGACAAGGAGGCTCTCGCAAATACCGCTTGACTTGGAAGTGGCTCAGATACTTTAAAAATGATAGGGACAGGCGGGATTTGATAACTTGTGGTGCAGCTGCTGGTGTTGCAGCTGCCTTTCGGGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGCGCTCTTCTCTGGAGGACCTTTTTCACGACTGCTGTAGTAGCCGTTGTCTTAAGGAGTTTCATTGAATTTTGCCGAGGGGGAGAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTCAACATCAATACAGAAAACTCCACTTATGGGACCCCAGATCTTATTGCAATTGTTTTACTAGGAGTTTTTGGCGGTGTACTTGGAAGCCTTTACAACTACCTCGTGGATAAGGTTCTCCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGCACGAAACTTATCCTTGTTGTTGGTGTTTCCATATTGACAACCTGTGTCTCATTTGGTCTTCCTTGGTTCTCGCAATGTTTACCGTGCCCAACTGACTTGGAGGATCAATGCCCAACCGTTGGTCGCTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGCCACTATAATGATCTTGCTTCCTTATTTTTCAATACCAATGATGATGCCATCCGAAACCTGTTCACATCTGCTACTGACAAGCATTTTCAGCTCTCCTCACTTTTTGTCTTCTTTGTTTCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCTGTGCCTTCTGGGCTCTTCATTCCTGTAATTCTGGCAGGGGCCTCTTACGGTCGCATTGTAGGAAGATTATTTGGTTCAGTTGCTACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGAACTATGAGAATGACTGTTTCTCTATGTGTCATACTCCTTGAACTTACTAATAACCTTTTGATGCTCCCATTACTGATGTTGGTTCTTCTAATTTCAAAGTCAGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAAGGACTGCCTTTTATGGAAGCCCACGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTACCTTTTCTGGGATCGAAAAGGTTGATAACATTGTCCACGCTTTGAAAATGACAAACCACAATGGGTTTCCTGTAATTGATGAACCACCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATCTGCTTGTTTTGCTTAAAGAAAAAAAATTTACTAAGCAAAAGGTGTCACTTAGATCAGAAATCTGGAGGGGATTCAAAGCACATGATTTTGCAAAAGCAGGTTCTGGTAAAGGGGTGAAACTGGAAGATTTGGACTTCAACGAGGAGGAGATGGAAATGTTTGTTGATCTTCATCCCATTACGAACACGTCGCCCTACACAGTGGTAGAATCAATGTCTCTAGCTAAAGCGGCAATTCTCTTTCATGCACTTGGCTTGAGGCACTTGTTGGTGGTTCCGAAGACACCTGGGAGGCCTCCTATTGCTGGAATTCTTACCCGGCACGACTTCATGCCGGAGCATGTTCTGGGACTTTACCCGCATCTCAACCCCCACAAATAG | 2370 | 44.98 | MSTTKLLAHTFDPIDENHDNDREIEASERLVGSPFTEDRDSVSLTLGEPLLRTSVARVSTTSQLAIVGSNICPIESLDYEIIENELFKQDWRSRKKLEIFQYIILKWTLCLFIGLITGLVGFFNNIAVENIAGHKLLLTNNLMLKEKYFQAFAVYVASNSALAAAAAILCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFIEFCRGGECGLFGEGGLIMFNINTENSTYGTPDLIAIVLLGVFGGVLGSLYNYLVDKVLRTYSIINERGPGTKLILVVGVSILTTCVSFGLPWFSQCLPCPTDLEDQCPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSATDKHFQLSSLFVFFVSIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIVHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLKEKKFTKQKVSLRSEIWRGFKAHDFAKAGSGKGVKLEDLDFNEEEMEMFVDLHPITNTSPYTVVESMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHVLGLYPHLNPHK | 789 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 10746456 | 10753580 | + | CmPI595203_10g015380.1 | Cmu10g1538 | 427068 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu10g1538 | 789 | CDD | ClC_6_like | 75 | 596 | - | - | |
| Cmu10g1538 | 789 | Gene3D | Clc chloride channel | 98 | 597 | - | - | |
| Cmu10g1538 | 789 | Pfam | CBS domain | 724 | 774 | IPR000644 | - | |
| Cmu10g1538 | 789 | Pfam | Voltage gated chloride channel | 163 | 576 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu10g1538 | 789 | SUPERFAMILY | Clc chloride channel | 84 | 598 | IPR014743 | - | |
| Cmu10g1538 | 789 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 599 | 776 | - | - | |
| Cmu10g1538 | 789 | FunFam | Chloride channel ClC3 | 98 | 414 | - | - | |
| Cmu10g1538 | 789 | PRINTS | Plant CLC chloride channel signature | 291 | 299 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cmu10g1538 | 789 | PRINTS | Plant CLC chloride channel signature | 323 | 330 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cmu10g1538 | 789 | PRINTS | Plant CLC chloride channel signature | 305 | 315 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cmu10g1538 | 789 | PRINTS | Plant CLC chloride channel signature | 80 | 88 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cmu10g1538 | 789 | PRINTS | Plant CLC chloride channel signature | 447 | 463 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cmu10g1538 | 789 | Gene3D | - | 622 | 760 | IPR046342 | - | |
| Cmu10g1538 | 789 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 59 | 777 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Cmu10g1538 | 789 | PRINTS | Chloride channel signature | 545 | 564 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu10g1538 | 789 | PRINTS | Chloride channel signature | 206 | 225 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu10g1538 | 789 | PRINTS | Chloride channel signature | 175 | 192 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu10g1538 | 789 | PRINTS | Chloride channel signature | 495 | 515 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu10g1538 | 789 | PRINTS | Chloride channel signature | 270 | 289 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu10g1538 | 789 | PRINTS | Chloride channel signature | 583 | 597 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu10g1538 | 789 | PRINTS | Chloride channel signature | 527 | 543 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu10g1538 | 789 | ProSiteProfiles | CBS domain profile. | 723 | 786 | IPR000644 | - | |
| Cmu10g1538 | 789 | SUPERFAMILY | CBS-domain pair | 600 | 774 | IPR046342 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu06g0588 | Cmu-Chr6:6585530 | Cmu10g1538 | Cmu-Chr10:10746456 | 1.70E-184 | dispersed | |
| Cmu10g1538 | Cmu-Chr10:10746456 | Cmu11g0319 | Cmu-Chr11:3754137 | 5.60E-260 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu10g1538 | K05016 | - | csv:101209987 | 1388.24 |