Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1538 ATGTCCACAACAAAGCTTCTTGCCCATACCTTTGACCCAATCGATGAGAATCACGACAACGACCGCGAAATTGAAGCCTCTGAGAGGCTCGTCGGATCGCCATTTACTGAGGATAGAGATTCTGTTTCCCTCACCCTAGGCGAGCCCCTCTTGCGTACCAGTGTCGCCAGGGTCAGTACCACCTCCCAGCTCGCCATTGTTGGTTCTAATATCTGTCCTATTGAGAGCCTCGACTACGAGATTATCGAGAATGAACTTTTCAAGCAGGATTGGAGGTCCAGAAAAAAGCTCGAGATATTTCAGTATATCATCCTCAAATGGACATTGTGCCTTTTCATCGGTTTAATTACAGGGCTTGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCCGGTCACAAACTTCTCCTGACAAATAATCTCATGCTCAAGGAAAAGTACTTTCAGGCATTTGCAGTATACGTTGCTTCCAATAGTGCTTTAGCTGCTGCTGCTGCAATCCTCTGTGCCTATATTGCCCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTCAACGGTATAGATGCTTATTCTATATTGGCTCCGAGTACCTTATTTGTGAAGATTTTTGGTTCAATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGTGCATGCATTGCCTCGTTACTGGGACAAGGAGGCTCTCGCAAATACCGCTTGACTTGGAAGTGGCTCAGATACTTTAAAAATGATAGGGACAGGCGGGATTTGATAACTTGTGGTGCAGCTGCTGGTGTTGCAGCTGCCTTTCGGGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGCGCTCTTCTCTGGAGGACCTTTTTCACGACTGCTGTAGTAGCCGTTGTCTTAAGGAGTTTCATTGAATTTTGCCGAGGGGGAGAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTCAACATCAATACAGAAAACTCCACTTATGGGACCCCAGATCTTATTGCAATTGTTTTACTAGGAGTTTTTGGCGGTGTACTTGGAAGCCTTTACAACTACCTCGTGGATAAGGTTCTCCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGCACGAAACTTATCCTTGTTGTTGGTGTTTCCATATTGACAACCTGTGTCTCATTTGGTCTTCCTTGGTTCTCGCAATGTTTACCGTGCCCAACTGACTTGGAGGATCAATGCCCAACCGTTGGTCGCTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGCCACTATAATGATCTTGCTTCCTTATTTTTCAATACCAATGATGATGCCATCCGAAACCTGTTCACATCTGCTACTGACAAGCATTTTCAGCTCTCCTCACTTTTTGTCTTCTTTGTTTCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCTGTGCCTTCTGGGCTCTTCATTCCTGTAATTCTGGCAGGGGCCTCTTACGGTCGCATTGTAGGAAGATTATTTGGTTCAGTTGCTACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGAACTATGAGAATGACTGTTTCTCTATGTGTCATACTCCTTGAACTTACTAATAACCTTTTGATGCTCCCATTACTGATGTTGGTTCTTCTAATTTCAAAGTCAGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAAGGACTGCCTTTTATGGAAGCCCACGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTACCTTTTCTGGGATCGAAAAGGTTGATAACATTGTCCACGCTTTGAAAATGACAAACCACAATGGGTTTCCTGTAATTGATGAACCACCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATCTGCTTGTTTTGCTTAAAGAAAAAAAATTTACTAAGCAAAAGGTGTCACTTAGATCAGAAATCTGGAGGGGATTCAAAGCACATGATTTTGCAAAAGCAGGTTCTGGTAAAGGGGTGAAACTGGAAGATTTGGACTTCAACGAGGAGGAGATGGAAATGTTTGTTGATCTTCATCCCATTACGAACACGTCGCCCTACACAGTGGTAGAATCAATGTCTCTAGCTAAAGCGGCAATTCTCTTTCATGCACTTGGCTTGAGGCACTTGTTGGTGGTTCCGAAGACACCTGGGAGGCCTCCTATTGCTGGAATTCTTACCCGGCACGACTTCATGCCGGAGCATGTTCTGGGACTTTACCCGCATCTCAACCCCCACAAATAG 2370 44.98 MSTTKLLAHTFDPIDENHDNDREIEASERLVGSPFTEDRDSVSLTLGEPLLRTSVARVSTTSQLAIVGSNICPIESLDYEIIENELFKQDWRSRKKLEIFQYIILKWTLCLFIGLITGLVGFFNNIAVENIAGHKLLLTNNLMLKEKYFQAFAVYVASNSALAAAAAILCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFIEFCRGGECGLFGEGGLIMFNINTENSTYGTPDLIAIVLLGVFGGVLGSLYNYLVDKVLRTYSIINERGPGTKLILVVGVSILTTCVSFGLPWFSQCLPCPTDLEDQCPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSATDKHFQLSSLFVFFVSIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIVHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLKEKKFTKQKVSLRSEIWRGFKAHDFAKAGSGKGVKLEDLDFNEEEMEMFVDLHPITNTSPYTVVESMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHVLGLYPHLNPHK 789
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 10746456 10753580 + CmPI595203_10g015380.1 Cmu10g1538 427068
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1538 789 CDD ClC_6_like 75 596 - -
Cmu10g1538 789 Gene3D Clc chloride channel 98 597 - -
Cmu10g1538 789 Pfam CBS domain 724 774 IPR000644 -
Cmu10g1538 789 Pfam Voltage gated chloride channel 163 576 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g1538 789 SUPERFAMILY Clc chloride channel 84 598 IPR014743 -
Cmu10g1538 789 CDD CBS_pair_voltage-gated_CLC_euk_bac 599 776 - -
Cmu10g1538 789 FunFam Chloride channel ClC3 98 414 - -
Cmu10g1538 789 PRINTS Plant CLC chloride channel signature 291 299 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cmu10g1538 789 PRINTS Plant CLC chloride channel signature 323 330 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cmu10g1538 789 PRINTS Plant CLC chloride channel signature 305 315 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cmu10g1538 789 PRINTS Plant CLC chloride channel signature 80 88 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cmu10g1538 789 PRINTS Plant CLC chloride channel signature 447 463 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cmu10g1538 789 Gene3D - 622 760 IPR046342 -
Cmu10g1538 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 59 777 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Cmu10g1538 789 PRINTS Chloride channel signature 545 564 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g1538 789 PRINTS Chloride channel signature 206 225 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g1538 789 PRINTS Chloride channel signature 175 192 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g1538 789 PRINTS Chloride channel signature 495 515 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g1538 789 PRINTS Chloride channel signature 270 289 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g1538 789 PRINTS Chloride channel signature 583 597 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g1538 789 PRINTS Chloride channel signature 527 543 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g1538 789 ProSiteProfiles CBS domain profile. 723 786 IPR000644 -
Cmu10g1538 789 SUPERFAMILY CBS-domain pair 600 774 IPR046342 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0588 Cmu-Chr6:6585530 Cmu10g1538 Cmu-Chr10:10746456 1.70E-184 dispersed
Cmu10g1538 Cmu-Chr10:10746456 Cmu11g0319 Cmu-Chr11:3754137 5.60E-260 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1538 K05016 - csv:101209987 1388.24