Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1572 ATGGAACTACCTTCACCATTTGTTTTCTTACTCCACCACCTTCCTCATCGTCAATCATCGATTACCCAATTTCAGATCAATAGCAGTTTTCAGCTGTCATTGTGCTGCATAGGAGTCTCATTGTTCAAGTTCCATCTTCCCAGCATTTATTTAGTCTTAGCAATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATTTGGGACCGTGGAGAAACTATTTGCATGAAGAAAATCTTAAGTTTACCTCTCAGAGCTATAACATACGACTACTGAATGTAGCTAGTCCATCGTCTCTTTTATTCCAGAAGAACACTTGGAGGACTCATTTATTTAGCATGAAATACCCACCTAATTACATTGTGCCTTCTAGATGCAATGTACTCAGGTGCCAGTCGTCATTGATGACAAACCAACCGCTGGATCCCCCTGGGATGAAGGCTGCTATAGTGGCATTGACAAGGTTTTGTAATGTATTAGGTGCTTGTCCTCCTCCGGTGGTTAATTTGGTTCCTGCGGCTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCATTATACGAGAAGCCTATTCCATAATGATAATAACTGGAAGAAAAGTCGGACATATAACATCATGACCTTGTATCTTCAACCATTACTGCTGTGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAACTTTGTTAGGTCATTGTCCACTGTGCTGGCCTTTGCATATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCCAGTGACGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCCGTATGGGTTGCCGCTCTCTCATTGTTCATGGAGCTGTTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTATTGCTGACATTAGCTGGCCGTGAGATTTTCACCAACTTCCTCTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACGAAGATTGAGGGCTACGAAGTTTCTGGCACTGTTGAGCATGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAGTTCACCGTGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATTAGCCATTTGGACGTCAACAAAATCAATAACATTGTTGCAGACATGCGGAAAGTCTTGGCGAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATCCTGAAAATCAGGCACTTTTGATTTTGATATCGTGTTTTGTTAAGACTTCACATTTTGAAGAATACCTTTGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACATCACCGGGCTCGACTTGCAACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACATGGAAAGCGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCGACTTTGAATCGCCGCATGCTGATGATTGAGCCCCCTTACAAAGTTTATGGAGAAGATAGAAAGCAAAGCCATAGCAGGACATCACGCACAACGGGAGAACAAAATGGTAAGCCCGTTGCACGGTCATCGGGTGACAGCAAGGCTGCCAAAGAGACAATGTCATCTGATAGAAAGACAGAAGTCAAGACTGGAGGAGATGCTGATACAAAAATGCATCCCAAAGTTTCGATGTCAACCTCTGAAGATAAATCAAGCAATGAATTGAAACATAAACCATCATCAAGGTCTGCTGCAAGTACCAGTACCTCTGATATGCCAGATGCCAAAACAACTAAATTAGATGCTGATAATTCAATGGAAGATTGCAGTCCCAAGCAATCCGAAAATAGCTTGGGAAGTAACAAGCAGAACTTCAAGCCTTCCCTTCCTGTTGTTTCCTTTCCGGAAGATGTTAAGAAACCAGAAGGAACTACTTCAGCAGCAGCTTCACAGCCAAGGATAGAAGGTGAGCAGACAACAGTTTCAAATCCATCGGTAACAAAGCCTGGCGTGGAAGAGAATATAATCCTTGGTGTTGCTTTGGATGGCTCCAAGAGAACACTTCCTATTGAGGACGAAGTACCTACCGCATCGGGAGCAAAAGATTTGGCTGCATGCAGGAATGGGAACAGTGCGAATGGAGCAACAACGGCAGATAAGAACATGAAACGTCAGTCTCCTTCTTCCCCTACCACATCTTCTAGTGAATAG 2352 42.86 MELPSPFVFLLHHLPHRQSSITQFQINSSFQLSLCCIGVSLFKFHLPSIYLVLAMVLVGSLQLSYHLGPWRNYLHEENLKFTSQSYNIRLLNVASPSSLLFQKNTWRTHLFSMKYPPNYIVPSRCNVLRCQSSLMTNQPLDPPGMKAAIVALTRFCNVLGACPPPVVNLVPAACIIMFAVWGLGPFLHYTRSLFHNDNNWKKSRTYNIMTLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDMESVPFSDSIFGHRGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPVARSSGDSKAAKETMSSDRKTEVKTGGDADTKMHPKVSMSTSEDKSSNELKHKPSSRSAASTSTSDMPDAKTTKLDADNSMEDCSPKQSENSLGSNKQNFKPSLPVVSFPEDVKKPEGTTSAAASQPRIEGEQTTVSNPSVTKPGVEENIILGVALDGSKRTLPIEDEVPTASGAKDLAACRNGNSANGATTADKNMKRQSPSSPTTSSSE 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11734112 11742244 - CmPI595203_10g015720.1 Cmu10g1572 427102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1572 783 Gene3D - 247 350 - -
Cmu10g1572 783 Pfam Mechanosensitive ion channel, beta-domain 336 406 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g1572 783 MobiDBLite consensus disorder prediction 691 716 - -
Cmu10g1572 783 SUPERFAMILY Sm-like ribonucleoproteins 336 406 IPR010920 -
Cmu10g1572 783 MobiDBLite consensus disorder prediction 756 783 - -
Cmu10g1572 783 MobiDBLite consensus disorder prediction 625 642 - -
Cmu10g1572 783 MobiDBLite consensus disorder prediction 584 603 - -
Cmu10g1572 783 MobiDBLite consensus disorder prediction 656 675 - -
Cmu10g1572 783 MobiDBLite consensus disorder prediction 746 783 - -
Cmu10g1572 783 Gene3D - 352 407 IPR023408 -
Cmu10g1572 783 MobiDBLite consensus disorder prediction 548 716 - -
Cmu10g1572 783 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 55 760 IPR045042 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1572 K22047 - - csv:101217250 1272.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1106 Cmu-Chr8:23394474 Cmu10g1572 Cmu-Chr10:11734112 1.80E-190 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g0157 . 175 568 Mechanosensitive Ion Channel Family AT4G00290 66.5 6.4e-153 537.7
Cmu08g1106 . 15 656 Mechanosensitive Ion Channel Family AT5G10490 58.5 1.7e-196 682.9
Cmu10g1572 . 109 782 Mechanosensitive Ion Channel Family AT5G10490 55.4 2.8e-191 665.6
Cmu08g1106 . 15 636 Mechanosensitive Ion Channel Family AT1G58200 58.0 3.6e-199 691.8
Cmu10g1572 . 97 559 Mechanosensitive Ion Channel Family AT1G58200 65.0 2.5e-171 599.4
Cmu02g1115 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 54.8 3.1e-259 891.7
Cmu02g0405 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 1.0e-238 823.5
Cmu02g1115 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.3 1.1e-245 846.7
Cmu02g1115 . 47 928 Mechanosensitive Ion Channel Family AT1G78610 58.4 1.2e-279 959.5
Cmu02g0405 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.9 5.0e-270 927.5
Cmu02g1115 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 4.2e-237 818.1
Cmu02g0405 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.7 1.1e-221 766.9
Cmu02g1115 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.3 4.1e-163 572.0
Cmu05g1606 . 62 719 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.9e-202 702.2
Cmu03g2121 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.7 6.7e-199 691.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71