Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1578 ATGGCTCCTGCCACTAACTGGCTCTCCTTCTCTCTTTCCCCCATTGAAATGCTTCGCTCCACTGATTCTCCCTTTCTTCCTTATGATTCTTCCTCCACTCCCTCCCCTCACTATCTCCTCGACAATTTCTACTCTCATAATGGATGGAGTAACAATAATACATCTCACCCAAAATCATCTCAACTTTTCTTCATGGATGGAGATGAAAATAACGATGCTGTGAAAGAAGACCAAACAACGACACCCACCATTTTTAGTACCTTCCTTCATCCACAAACCCATCATCACCACCAACCCAAGCTTGAAGATTTCCTGGGCGATTCCTCTCCCATGGTGCGATATTCCGACAGCCAAACCGACACTCAAGATTCCTCTTTAACTCATATTTACGACCATGCTTCCGCCCCCCCTTACTTCGCCGACCAACAAGATCTCAAAACTATTGCTGCTTTTCAAGCTTTTTCAGCCAACTCTGGCTCTGAAGTTGATGATTCTGCTTCTATTGCTAGAACCCATATCCCCTCTGCTCATTCTATTGAATCTTCTCTCACTAATAATGAGTTGCCCTCTTTCTCTAACTGCCCTACCGGTGCTCTCTCACTCGCTGTCGCTCACTCCTCCGACACCGCCACTGCTGGGCCTATTGTGGCTGTAGATTCTGAGTCCTCTAAGAAAATTGCTGATACTTTTGGCCAGAGAACTTCCATTTACAGAGGAGTCACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGATAAGGAGGAAAAAGCAGCTAGGGCTTATGATTTGGCGGCTTTGAAGTACTGGGGTCCCACAGCAACCACCAATTTTCCTGTTTCAAATTATGCCAAGGAATTGGAAGAAATGAAACATGTCACCAAACAAGAGTTTATCGCTTCCTTGCGAAGAAAGAGCAGCGGTTTTTCGCGAGGTGCCTCTATTTATAGAGGTGTAACAAGGCATCATCAGCAGGGTCGATGGCAGGCAAGAATTGGTCGTGTTGCTGGCAACAAGGACTTGTATCTCGGGACGTTTGCTACTGAAGAGGAAGCAGCTGAGGCTTACGATATAGCAGCAATCAAGTTTAGAGGTTTGAATGCCGTGACAAACTTTGAGATGAGTCGATATGATGTGGAAGCTATTGCAAAGAGTGCGCTGCCTATCGGGGGAGCAGCAAAGAGGCTGAAGCTTTGTCTGGAATCCGATCAGAAGCCGATTCCAAATCACGATCAAGCAACCCAATGCAGCAGTGGAAGCAACAATATCAACTTCGGCACCACTGTGCAAGCTGTGCCACCAATCCCTTGTGGTATTCCATACGACACTGCAGCTGTGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAATGCCATCGGTTCGTCGGAGTCGACCAGCCCAGGCATTGCAGGACTGGGGACTGTGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCGCCAATCGTATTAA 1539 47.24 MAPATNWLSFSLSPIEMLRSTDSPFLPYDSSSTPSPHYLLDNFYSHNGWSNNNTSHPKSSQLFFMDGDENNDAVKEDQTTTPTIFSTFLHPQTHHHHQPKLEDFLGDSSPMVRYSDSQTDTQDSSLTHIYDHASAPPYFADQQDLKTIAAFQAFSANSGSEVDDSASIARTHIPSAHSIESSLTNNELPSFSNCPTGALSLAVAHSSDTATAGPIVAVDSESSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESDQKPIPNHDQATQCSSGSNNINFGTTVQAVPPIPCGIPYDTAAVLYHHNYFHHLQPNAIGSSESTSPGIAGLGTVAPQAAEFFVWPRQSY 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12056366 12060159 - CmPI595203_10g015780.1 Cmu10g1578 427108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1578 512 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 142 429 - -
Cmu10g1578 512 ProSiteProfiles AP2/ERF domain profile. 236 299 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1578 512 CDD AP2 235 301 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1578 512 SUPERFAMILY DNA-binding domain 334 395 IPR016177 GO:0003677(InterPro)
Cmu10g1578 512 Pfam AP2 domain 336 385 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1578 512 SUPERFAMILY DNA-binding domain 235 301 IPR016177 GO:0003677(InterPro)
Cmu10g1578 512 CDD AP2 334 395 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1578 512 SMART rav1_2 335 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1578 512 SMART rav1_2 236 305 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1578 512 PRINTS Ethylene responsive element binding protein signature 375 395 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1578 512 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1578 512 FunFam AP2-like ethylene-responsive transcription factor 334 395 - -
Cmu10g1578 512 ProSiteProfiles AP2/ERF domain profile. 335 393 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1578 512 FunFam AP2-like ethylene-responsive transcription factor ANT 235 301 - -
Cmu10g1578 512 Gene3D AP2/ERF domain 335 395 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1578 512 Gene3D AP2/ERF domain 236 301 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1610 Cmu-Chr8:27776424 Cmu10g1578 Cmu-Chr10:12056366 1.20E-85 dispersed
Cmu10g1578 Cmu-Chr10:12056366 Cmu11g0801 Cmu-Chr11:9496474 2.20E-100 dispersed
Cmu10g1578 Cmu-Chr10:12056366 Cmu01g1727 Cmu-Chr1:30967935 5.30E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6970 PF00847 AP2 1.90E-09 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1578 K09285 - csv:101217714 880.937