Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1617 ATGCAGCTTCTTCTCCTTCTCTTTCTCCTTCTTCACCTCCATCTTCATCTCTCCCTTTCTTCTCACTTGCCTGAATATCGCGCTCTTCTCTCTCTCAAGAGCTCGTTTTCCGATGACTCCCAATCGCCGCTCTCCACTTGGGACGCCGCCACTGCCCACTGTACTTGGACCGGAGTCACCTGCGATTTCCGTCGCCACGTCGTCGGCCTCGACCTTGCAGGATTGAATCTCTCTGGTACTCTCTCTCCTGACCTGGGTTCTCTCCGGTTTCTCTCTAATCTCTCCCTCCCGTCCAATCAGATTTCCGGCCCCATTCCGCCGGAGATCTCTGCCATCTCTACACTTAAATACCTTAACCTCTCTAACAATCTCATTAATGGTACATTGCCCTTGCAACTCTCCTTGCTCAACAATCTGGAGGTTCTTGATTTGTATAACAATAATATGTCTGGGAACTTGCCGCTTGTGGTCATACAGTTGCCAAATCTCCGCCATTTGCATCTCGGGGGGAACTTCTTCTCCGGTGTGATTCCGCCGGGGTATGGAATGTGGCAGTTCATGGAGTATTTGGCGGTGTCTGGAAATGAGCTTCAAGGTCCGATCCCGCCGGAGATTGGTAATCTGACGAAGCTTCGTGAACTTTACATTGGGTATTATAATACCTACGACGGCGGTTTGCCGCCGGAAATTGGAAACTTATCGGAACTGGTTCGATTGGATGCTGCTAACTGTGGGTTGACGGGTGAGATCCCTCGCGAACTTGGAAAACTTAAGAAATTGGATACTCTGTTTCTTCAGGTGAACGGCTTTTCTGGGCCTTTGATTCCAGAACTTGGGAGCTTAACGGGATTGAAATCCATGGATTTATCTAACAACATTCTTGTTGGTGAGATTCCGGAGTCATTCTCTCAACTGAAGAACTTGACGCTTTTGCATCTTTTCAGGAATAAGCTTCATGGAGCTATTCCACAGTTCATCGGTGAGTTGCCGGAGCTGGAAGTGTTGCAGTTGTGGGAAAATAACTTCACTGGTTCTATTCCTTATAGTTTGGGGAAGAATGGGAAGCTCGTTGTTCTCGACATTTCATCAAACAAGTTGACTGGAACTTTGCCTCCCGATATGTGCAATGGAAATAAACTTCAAACTCTGATAACCCTCGGTAATTTCTTGTTTGGTCCAATCCCTGAATCTCTTGGTAGATGCGAGTCGTTGAGCCGTATTCGAATGGGGGAGAATTTTCTCAATGGTTCCATCCCGAACGGTCTTTTCGGTTTGCCTAATCTTTCTCAAGTTGAGTTGCAGAACAATTTTCTCACCGGAGAATTTCCAGTCACTGATTCCGTCTCGGCAAATCTCGGCCAAATTAGTCTCTCAAACAATCGGCTCTCGGGATCCCTTCCATCGATGGTTGGAAATTTCTCCGGCGTCCAGAAGCTTCTACTCGATGGGAACAAATTCTCCGGCCAAATCCCACCTGAAATCGGACGGTTACAGCAGCTGTCAAAGATTGATTTCAGCCACAACAAATTCTCCGGTCCAATCGCTCCGGAGATCAGCCAATGTAAGCTCTTAACCTTCGTCGATCTCAGTCGTAACGAACTCTCGGGTGAGATTCCGAATGAAATCACCGCAATGAGGATATTGAACTATCTGAATCTCTCAAGAAATCACTTAATCGGAAGCGTTCCTGCTTCAATATCCTCAATGCAGAGCTTAACATCTGTTGATTTTTCATATAACAATCTCTCTGGTTTAGTTCCGGGCACGGGCCAGTTTAGCTACTTCAACTACACTTCATTTCTAGGCAACCCAGATCTCTGCGGTCCGTACTTAGGACCTTGCAAAAATGGGGTCGGCAATGGCACACAGCAGCCTCATTTAAAAGCCTCACTCTCTTCTTCTGTGAAACTTCTGCTTGTCATTGTTTTGCTCGTCTGCTCGATCGCATTTGCCATTGCAGCAATCATCAAAGCTCGGTCGCTAAAACGAGCAAGCGGGTCTCGAGCTTGGAAATTAACCGCATTCCAAAGACTAGATTTCACAGCAGATGACATTTTGGACTGTTTGAAAGAGGACAACATTATTGGGAAAGGAGGTGCTGGGATCGTTTACAAAGGTTTTATGCCGAGTGGCGATCACATCGCTGTGAAAAGACTGCCGGCGATGGGGCGAGGATCATCCCATGACCATGGATTCAATGCTGAGATACAGACTTTGGGGAGGATTAAACATCGTCACATTGTTAGATTATTGGGTTTCTGCTCAAACCATGAAACCAATCTTCTGGTTTATGAGTATATGCCTAATGGGAGTTTAGGGGAAGTTCTACACGGGAAGAAAGGTGGGCATTTGCAATGGGACACAAGGTATAAGATCGCCATTGAAGCTGCTAAAGGTCTTTGCTATTTACATCATGACTGTTCGCCATTGATTGTCCATCGAGATGTAAAATCAAACAACATTCTTCTGGATTCTGATTATGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTTCTTCAGGATTCAGGCACATCAGAGTGTATGTCCGCCATAGCTGGTTCTTACGGATACATAGCTCCAGAATATGCCTATACATTGAGAGTAGACGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTACTCTTAGAATTGGTGAGTGGGCGGAAGCCCGTCGGAGAATTTGGCGATGGGGTCGACATAGTTCAGTGGGTCAGGAAAATGACTAGTCCCAACAATGAAGGGGTAGCGAAAATCATAGATCCACGGCTCTCCTCAGTCCCGCTGAATGAAGTAACTCATGTATTCTATGTAGCAATGCTATGTGTGGAAGACCAAGCCGTGGAGAGGCCAACAATGAGAGAAGTAGTTCAAATCCTCACAGAACTCCCAAGGCCACCTTCAAAACAAATAAACTCAAAAGAAGCCGAAGTAACAACCCCGACGCTGCTGCCATCGTCCCCAGTGGTGGCATTAGATTCACCGAACAAAGCACAGCCACCACCTGATCTTCTGAGCATTTGA 3024 46.4 MQLLLLLFLLLHLHLHLSLSSHLPEYRALLSLKSSFSDDSQSPLSTWDAATAHCTWTGVTCDFRRHVVGLDLAGLNLSGTLSPDLGSLRFLSNLSLPSNQISGPIPPEISAISTLKYLNLSNNLINGTLPLQLSLLNNLEVLDLYNNNMSGNLPLVVIQLPNLRHLHLGGNFFSGVIPPGYGMWQFMEYLAVSGNELQGPIPPEIGNLTKLRELYIGYYNTYDGGLPPEIGNLSELVRLDAANCGLTGEIPRELGKLKKLDTLFLQVNGFSGPLIPELGSLTGLKSMDLSNNILVGEIPESFSQLKNLTLLHLFRNKLHGAIPQFIGELPELEVLQLWENNFTGSIPYSLGKNGKLVVLDISSNKLTGTLPPDMCNGNKLQTLITLGNFLFGPIPESLGRCESLSRIRMGENFLNGSIPNGLFGLPNLSQVELQNNFLTGEFPVTDSVSANLGQISLSNNRLSGSLPSMVGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSHNKFSGPIAPEISQCKLLTFVDLSRNELSGEIPNEITAMRILNYLNLSRNHLIGSVPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKNGVGNGTQQPHLKASLSSSVKLLLVIVLLVCSIAFAIAAIIKARSLKRASGSRAWKLTAFQRLDFTADDILDCLKEDNIIGKGGAGIVYKGFMPSGDHIAVKRLPAMGRGSSHDHGFNAEIQTLGRIKHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSDYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTSPNNEGVAKIIDPRLSSVPLNEVTHVFYVAMLCVEDQAVERPTMREVVQILTELPRPPSKQINSKEAEVTTPTLLPSSPVVALDSPNKAQPPPDLLSI 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14382863 14386059 + CmPI595203_10g016170.1 Cmu10g1617 427147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1617 1007 Gene3D Phosphorylase Kinase; domain 1 657 766 - -
Cmu10g1617 1007 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Cmu10g1617 1007 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1617 1007 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Cmu10g1617 1007 Gene3D Ribonuclease Inhibitor 132 220 IPR032675 -
Cmu10g1617 1007 Pfam Leucine Rich Repeat 236 257 IPR001611 GO:0005515(InterPro)
Cmu10g1617 1007 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Cmu10g1617 1007 Pfam Leucine Rich Repeat 284 305 IPR001611 GO:0005515(InterPro)
Cmu10g1617 1007 Pfam Leucine Rich Repeat 162 180 IPR001611 GO:0005515(InterPro)
Cmu10g1617 1007 Pfam Leucine Rich Repeat 138 155 IPR001611 GO:0005515(InterPro)
Cmu10g1617 1007 Pfam Leucine Rich Repeat 332 352 IPR001611 GO:0005515(InterPro)
Cmu10g1617 1007 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515(InterPro)
Cmu10g1617 1007 Pfam Leucine Rich Repeat 355 376 IPR001611 GO:0005515(InterPro)
Cmu10g1617 1007 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Cmu10g1617 1007 Pfam Leucine Rich Repeat 115 134 IPR001611 GO:0005515(InterPro)
Cmu10g1617 1007 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Cmu10g1617 1007 Pfam Leucine Rich Repeat 524 543 IPR001611 GO:0005515(InterPro)
Cmu10g1617 1007 Gene3D Transferase(Phosphotransferase) domain 1 767 981 - -
Cmu10g1617 1007 Gene3D Ribonuclease Inhibitor 24 131 IPR032675 -
Cmu10g1617 1007 MobiDBLite consensus disorder prediction 985 1007 - -
Cmu10g1617 1007 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Cmu10g1617 1007 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 977 - -
Cmu10g1617 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g1617 1007 SMART LRR_typ_2 281 305 IPR003591 -
Cmu10g1617 1007 SMART LRR_typ_2 160 183 IPR003591 -
Cmu10g1617 1007 SMART LRR_typ_2 497 521 IPR003591 -
Cmu10g1617 1007 SMART LRR_typ_2 354 377 IPR003591 -
Cmu10g1617 1007 SMART LRR_typ_2 569 592 IPR003591 -
Cmu10g1617 1007 SMART LRR_typ_2 329 353 IPR003591 -
Cmu10g1617 1007 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Cmu10g1617 1007 SUPERFAMILY RNI-like 69 391 - -
Cmu10g1617 1007 SUPERFAMILY L domain-like 296 615 - -
Cmu10g1617 1007 Gene3D Ribonuclease Inhibitor 379 615 IPR032675 -
Cmu10g1617 1007 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1617 1007 Gene3D Ribonuclease Inhibitor 221 378 IPR032675 -
Cmu10g1617 1007 SMART serkin_6 689 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1617 1007 SUPERFAMILY Protein kinase-like (PK-like) 685 960 IPR011009 -
Cmu10g1617 1007 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 962 IPR050647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1745 Cmu-Chr1:31153033 Cmu10g1617 Cmu-Chr10:14382863 9.30E-23 dispersed
Cmu01g1746 Cmu-Chr1:31168545 Cmu10g1617 Cmu-Chr10:14382863 3.20E-21 dispersed
Cmu01g2540 Cmu-Chr1:37229873 Cmu10g1617 Cmu-Chr10:14382863 4.00E-132 dispersed
Cmu05g0390 Cmu-Chr5:3338379 Cmu10g1617 Cmu-Chr10:14382863 1.70E-76 dispersed
Cmu05g1860 Cmu-Chr5:28624357 Cmu10g1617 Cmu-Chr10:14382863 1.70E-08 dispersed
Cmu06g0748 Cmu-Chr6:8852076 Cmu10g1617 Cmu-Chr10:14382863 3.60E-79 dispersed
Cmu07g0194 Cmu-Chr7:1870089 Cmu10g1617 Cmu-Chr10:14382863 1.10E-85 dispersed
Cmu09g2053 Cmu-Chr9:36590261 Cmu10g1617 Cmu-Chr10:14382863 8.90E-66 dispersed
Cmu10g1507 Cmu-Chr10:10189928 Cmu10g1617 Cmu-Chr10:14382863 1.60E-139 dispersed
Cmu10g1617 Cmu-Chr10:14382863 Cmu11g1490 Cmu-Chr11:27233589 1.90E-74 dispersed
Cmu10g1614 Cmu-Chr10:14227073 Cmu10g1617 Cmu-Chr10:14382863 2.20E-75 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75839 PF07714 PK_Tyr_Ser-Thr 2.10E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1617 - - - 0.0