Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1632 ATGAAGCCATGGGGTAATTTGGGCCTTTGGTTCACAGCCATGGCTGCCGTTTTCCTCTTCTTCTTCTGTCTCGACCACAATGGCTACCGGATTTCAACGTTCTCAGTAAGGAGATACCTAAGGGACATGGACATCAACAATTCTTCGACACTGTTCAACGTCACACTACAAAGAAAAGGTGGATATGTTATAATGGACAATGGCATTGTCCTAGTTACTCTTTCAACTCCAGATGGCGACGTTATTGGATTGAGCTACAATGGAATCGACAACATTCTCGAAACCAAAAACGATGAGCAAAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAGACGAACCCATTACCACGGACAGATTAAAAGGAGAGAGTTTTGAAGTAATAGTAACGAACGAGGAACAACTGGAAATATCGTTTAAGAAAACATGGAGTTTTGCAGTTGGGAACGAGACGGCCCCCGTAAATGTAGACAAAAGGTATGTATTGCTGAGAGGAAGCTCTGGGTTTTATAGTTATGCAATATTCGAGAGGCCCATTGGTTGGCCCCAGATTGAAATGGATCAAGTTAGGATTGTTTACAAGCTTCAAAGCACAATGTTTGATTATATGGCTGTGTCGGACGATAGGCAAAGGGTGATGCCCACAATGAGAGACCGTGAAAATGGTGAGCCATTGGCTTATCCCGAGGCCGTTCTTTTGACTAATCCTACCAATGAAGAACTCAGAGGAGAGGTGGATGACAAGTACCAGTACTCAACAGAGGACAAGGACAACCAAGTTCACGGCTGGATCTGCAGCGATCCGCCGGTGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGGGTCGCCGGTCCTGTCAAGCAGGATCTCACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATTGGCATGAGATTTGCAGCTGGAGAGCCCTGGAAGAAGGTCTTCGGCCCTATCTTTGTCTATCTCAACTCTGTTTCCCCTGAAGAGGATTCTCTATCCCTCTGGCAAGATGCCAAACAACAGTTGGCAATAGAAATCAATGAGTGGCCCTACTCTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGTGTCACTGGCCGGTTATTAGTCCGTGATGGGTACATCAGTAGCAAACTCATGCGGGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAACGGAAACCAAGGGCTATCAGTTCTGGACTCGAGCTGACAATCACGGCAACTTCTTAATCAATAACATCCGAGCTGGGGTTTACAATCTGTATGCTTTTGTCCCTGGCTTCATTGGAGACTACAAATACGAAGCAAATATTACAATTGAGCTCGGGTCTGAAATCAGATTGGATGTGATGGTGTTTGATCTGCCGAGACAAGGCCCAACCATCTGGGAGATTGGCATTCCCGATCGCACTGCAGCAGAGTTTTATGTGCCCGATCCTTATCCGACTCTCATGAATAAACTGTACAACAACCATGCTGACAAGTTCAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACCGTCGGTGTTGACGATTATACAAGGGACTGGTTCTATGCTCATGTTAACAGGAATGTGGGGAATCAAACATACCAATCGACCACTTGGGAGATCAGATTTTTATTGCAATCTGTGAACCAAACGGCAAGTTACACACTGCAAATTGCATTAGCATCTGCTGCTGAATGCGAATTACAGGTTCGATTAAACGATCGAGAATCAGAGCAGGCTGCTTTCTCGACAGGGAAGATCGGAAAGGACAATGCGATTGCAAGGCATGGCATACATGGACTTTACTGGTTATACTCCATACCTCTCCCTGGTGATCAATTTCTACAAGGGAACAACTCCATCTATCTCACTCAGGCAAGAAGCGAAAGCCCTTTCGAAGGTCTCATGTACGACTACATTCGACTTGAAGCTCCACCTCCAACATAA 2043 46.5 MKPWGNLGLWFTAMAAVFLFFFCLDHNGYRISTFSVRRYLRDMDINNSSTLFNVTLQRKGGYVIMDNGIVLVTLSTPDGDVIGLSYNGIDNILETKNDEQNRGYWDAVWNNPDEPITTDRLKGESFEVIVTNEEQLEISFKKTWSFAVGNETAPVNVDKRYVLLRGSSGFYSYAIFERPIGWPQIEMDQVRIVYKLQSTMFDYMAVSDDRQRVMPTMRDRENGEPLAYPEAVLLTNPTNEELRGEVDDKYQYSTEDKDNQVHGWICSDPPVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMRFAAGEPWKKVFGPIFVYLNSVSPEEDSLSLWQDAKQQLAIEINEWPYSFPQSEDFPSSAQRGSVTGRLLVRDGYISSKLMRASNAFVGLALPGPVGSWQTETKGYQFWTRADNHGNFLINNIRAGVYNLYAFVPGFIGDYKYEANITIELGSEIRLDVMVFDLPRQGPTIWEIGIPDRTAAEFYVPDPYPTLMNKLYNNHADKFRQYGLWERYAAMYPNNDLVFTVGVDDYTRDWFYAHVNRNVGNQTYQSTTWEIRFLLQSVNQTASYTLQIALASAAECELQVRLNDRESEQAAFSTGKIGKDNAIARHGIHGLYWLYSIPLPGDQFLQGNNSIYLTQARSESPFEGLMYDYIRLEAPPPT 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15683243 15695048 + CmPI595203_10g016320.1 Cmu10g1632 427162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1632 680 Gene3D - 484 675 - -
Cmu10g1632 680 Pfam Rhamnogalacturonate lyase family 53 246 IPR010325 -
Cmu10g1632 680 SUPERFAMILY Galactose-binding domain-like 484 675 IPR008979 -
Cmu10g1632 680 SUPERFAMILY Galactose mutarotase-like 65 339 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cmu10g1632 680 CDD RGL4_N 60 344 - -
Cmu10g1632 680 CDD RGL4_M 377 473 IPR029413 -
Cmu10g1632 680 Pfam Polysaccharide lyase family 4, domain II 400 472 IPR029413 -
Cmu10g1632 680 Gene3D - 52 341 IPR014718 GO:0030246(InterPro)
Cmu10g1632 680 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 49 678 IPR051850 -
Cmu10g1632 680 FunFam Rhamnogalacturonate lyase B 374 473 - -
Cmu10g1632 680 CDD RGL4_C 488 675 - -
Cmu10g1632 680 Pfam Polysaccharide lyase family 4, domain III 486 674 IPR029411 -
Cmu10g1632 680 Gene3D - 374 476 - -
Cmu10g1632 680 SUPERFAMILY Starch-binding domain-like 375 476 IPR013784 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1632 Cmu-Chr10:15683243 Cmu11g1472 Cmu-Chr11:27020344 8.90E-230 dispersed
Cmu10g1632 Cmu-Chr10:15683243 Cmu01g1769 Cmu-Chr1:31414268 3.40E-237 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1632 K18195 - csv:101215252 1261.51