Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1637 ATGGGTTTGGATGATTTTTGTCAAACAGGCTTGGTGTTGGGCTTAGGGCTCTCTAATGATCAAAGGTTGAAGAAGAAGCCTACACCTTGCTCCTCTAGTTCCCTTGATTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCCGGCACTGGAGGCGGCAGCGAAACTCACCAGAAAGTTATTGATGTCAACAACAAGATGATGATGATTAATAACAACAACTCTGATGTGGGTGTTCATCATTTGCATCGACAAGAAGCTTCCACTCATAGCAGCAGCGCTGTTTGTTCTTCCTTCTCCGGCGGCGGTAGGGTTAAAAGGGAGCGAGATCTTAGCAGCGAAGAAGTTCAATTGGACAGACTTTCTTCTAGAGTTAGTGATGAAGATGAAGATGGTTCTAATGCTAGAAAGAAACTTAGGCTCTCTAAACAACAAGCCGCTCTCTTGGAACAAAGTTTCAAGCAAAATAGCACCCTCAATCCTAAGCAAAAACAAGCCTTGGCGAGACAGCTAAATCTACGGCCACGACAAGTTGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAACTGAAACAAACAGAAGTAGACTGTGAGTTATTGAAGAAGTGTTGTGAGACGTTGACAGATGAAAATAGAAGGCTACAAAAGGAGCTTCAAGAATTGAAGTCGTTAAAGCTGGCTCAACCACTATACATGCAGATGCCGGCGGCGACATTAACTATATGCCCCTCCTGCGAAAGGCTCGGCAGCGGCGGCGGCGCTTCCAAACCCAAATTTTCAATGGCTCCTACGCCTCACTTTTACAACCCCTTCTCCAGTCCTTCCGCCGCATGTTAG 837 45.28 MGLDDFCQTGLVLGLGLSNDQRLKKKPTPCSSSSLDFEPCALTLGFSGTGGGSETHQKVIDVNNKMMMINNNNSDVGVHHLHRQEASTHSSSAVCSSFSGGGRVKRERDLSSEEVQLDRLSSRVSDEDEDGSNARKKLRLSKQQAALLEQSFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQELKSLKLAQPLYMQMPAATLTICPSCERLGSGGGASKPKFSMAPTPHFYNPFSSPSAAC 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16923987 16925054 - CmPI595203_10g016370.1 Cmu10g1637 427167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1637 278 MobiDBLite consensus disorder prediction 102 137 - -
Cmu10g1637 278 SMART halz 191 234 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1637 278 FunFam Homeobox-leucine zipper protein 18 121 196 - -
Cmu10g1637 278 Pfam Homeobox associated leucine zipper 191 224 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1637 278 CDD homeodomain 135 192 IPR001356 GO:0003677(InterPro)
Cmu10g1637 278 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu10g1637 278 Coils Coil 197 227 - -
Cmu10g1637 278 MobiDBLite consensus disorder prediction 81 137 - -
Cmu10g1637 278 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Cmu10g1637 278 SMART HOX_1 133 195 IPR001356 GO:0003677(InterPro)
Cmu10g1637 278 SUPERFAMILY Homeodomain-like 122 192 IPR009057 -
Cmu10g1637 278 Gene3D - 139 189 - -
Cmu10g1637 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 270 IPR050762 -
Cmu10g1637 278 Pfam Homeodomain 135 189 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1736 Cmu-Chr1:31093573 Cmu10g1637 Cmu-Chr10:16923987 7.50E-76 dispersed
Cmu05g1805 Cmu-Chr5:28161624 Cmu10g1637 Cmu-Chr10:16923987 1.40E-50 dispersed
Cmu06g1449 Cmu-Chr6:25754493 Cmu10g1637 Cmu-Chr10:16923987 4.10E-40 dispersed
Cmu10g1637 Cmu-Chr10:16923987 Cmu10g2496 Cmu-Chr10:31622757 2.00E-50 dispersed
Cmu10g1637 Cmu-Chr10:16923987 Cmu09g0364 Cmu-Chr9:3512101 3.00E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6973 PF00046 Homeodomain 5.20E-16 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1637 K09338 - csv:101205848 370.548