Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g1661 | ATGGAGGTGGAGGAGCACGAAGAAGAAGACATGGAAATAGTAGAACCAGCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCCTATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGTCGTCAACGGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCGGCACGGAAGCGAGTGCGGACGAAGTTCACGGAAGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGACGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAGTAAGGAATCCAAACAAAACTAA | 591 | 53.98 | MEVEEHEEEDMEIVEPASNYINKIHPLSRHTKNPSPVHSNPILYNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGVVNGESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSKESKQN | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 18561392 | 18561982 | + | CmPI595203_10g016610.1 | Cmu10g1661 | 427191 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g1661 | 196 | FunFam | Zinc-finger homeodomain protein 2 | 119 | 190 | - | - | |
Cmu10g1661 | 196 | Gene3D | - | 121 | 191 | - | - | |
Cmu10g1661 | 196 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 46 | 95 | IPR006456 | - | |
Cmu10g1661 | 196 | SUPERFAMILY | Homeodomain-like | 123 | 189 | IPR009057 | - | |
Cmu10g1661 | 196 | Pfam | ZF-HD protein dimerisation region | 45 | 96 | IPR006456 | - | |
Cmu10g1661 | 196 | NCBIfam | homeobox domain, ZF-HD class | 129 | 186 | IPR006455 | - | |
Cmu10g1661 | 196 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 29 | 187 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Cmu10g1661 | 196 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 45 | 95 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g1440 | Cmu-Chr8:26502425 | Cmu10g1661 | Cmu-Chr10:18561392 | 1.20E-38 | dispersed | |
Cmu09g1750 | Cmu-Chr9:33520914 | Cmu10g1661 | Cmu-Chr10:18561392 | 3.90E-36 | dispersed | |
Cmu10g1661 | Cmu-Chr10:18561392 | Cmu11g0008 | Cmu-Chr11:481676 | 1.50E-36 | dispersed | |
Cmu10g1661 | Cmu-Chr10:18561392 | Cmu01g1793 | Cmu-Chr1:31618341 | 3.40E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6975 | PF04770 | ZF-HD_dimer | 4.60E-28 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g1661 | - | - | - | 0.0 |