Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1661 ATGGAGGTGGAGGAGCACGAAGAAGAAGACATGGAAATAGTAGAACCAGCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCCTATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGTCGTCAACGGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCGGCACGGAAGCGAGTGCGGACGAAGTTCACGGAAGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGACGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAGTAAGGAATCCAAACAAAACTAA 591 53.98 MEVEEHEEEDMEIVEPASNYINKIHPLSRHTKNPSPVHSNPILYNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGVVNGESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSKESKQN 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18561392 18561982 + CmPI595203_10g016610.1 Cmu10g1661 427191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1661 196 FunFam Zinc-finger homeodomain protein 2 119 190 - -
Cmu10g1661 196 Gene3D - 121 191 - -
Cmu10g1661 196 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Cmu10g1661 196 SUPERFAMILY Homeodomain-like 123 189 IPR009057 -
Cmu10g1661 196 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
Cmu10g1661 196 NCBIfam homeobox domain, ZF-HD class 129 186 IPR006455 -
Cmu10g1661 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 187 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cmu10g1661 196 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1440 Cmu-Chr8:26502425 Cmu10g1661 Cmu-Chr10:18561392 1.20E-38 dispersed
Cmu09g1750 Cmu-Chr9:33520914 Cmu10g1661 Cmu-Chr10:18561392 3.90E-36 dispersed
Cmu10g1661 Cmu-Chr10:18561392 Cmu11g0008 Cmu-Chr11:481676 1.50E-36 dispersed
Cmu10g1661 Cmu-Chr10:18561392 Cmu01g1793 Cmu-Chr1:31618341 3.40E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6975 PF04770 ZF-HD_dimer 4.60E-28 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1661 - - - 0.0