Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1690 ATGGATCCAGAGACGCAAAATGATCAGTCAATACAAGAATACCTCCAAAAGATGCTCCCAAATACAAAGCGCGAATGTTACCTGCATTTAATCTCTGATGGGAAGGTAATATTGGAGGGGAAATCTAACTTCGCAAAAAAGCAGCCTTTATTGGATGCTATTACTACTGAATCTCTGAGGATGGGTGATAGTTTTAATCAATGGATGAGTAGAGAACTAGGAGATGTGAAGGAGGCAAGCATGCAGTCCAACTCTGGAACATACTGGAATAGTGTAGAAAATGACGTTGGACAGCTCTTTCACATTATTGATTTTTCACCAAGCTGGGCATATGAAGGTTCTGAAATCAAGGTTTTGGTATCAGGGAAGTTCTTGAAGAGTCCACATGAAGTGGAAAATCTTAAATGGTGTTGCATGTTTGGAGAGGTGGAAGTACCAGCTGATGTTATAGCAGATGGTGTATTGCGATGTTTTACTCCCATACACAAGGCTGGGAAGGTTCCCTTTTATGTTACACGTTCCAATAGATTAGCTTGTAGTGAAGTACGAGACTTTGAATACCGAGTTAAGTGCATACAAGATGTGGATGTAATGTACGATCATAGCATCAAAAATCAAGCACTTGTTTTGCGTTTTGTAAAATTAATATGCCTGAGCTGTTCAGACACTTTGATTGCTGATCCAAACAGCTCAAGTGACAGATCTGACTATAATAAAATCCGCAAATTGCTAGAGGTTGACAATAGTGAGTGGGATCAGTTGATAAAGCCTAGATGGGATGAGAGTGTTTCCCTTGAAAGTGCAAAAGAATTGCTGCTTCAAAGGCTACTTAAAGAGAAGCTACACGTATGGCTATTGCAAAAAGTCAGGGAAGGTGGGAGAGGCCCTAGCGTATTGGATGAGCAAGGTCAAGGCGTGATACATTTTGCTGCTGCACTTAACTATGATTGGGCCCTTCTACCAGCATTAGTTGCTGGTATAAATGTCAATTTTCGTGATGCAAATGGATGGACAGCACTACATTGGGCTGCATTCTTTGGCAGAGAGCGTACAGTCGCTGCCCTCATCTCTCTGGGTGCAGCTCCTGGAGCACTGGCAGATCCAAGCCTCAAGTATCCATCTGGCAGAACTCCTGCTGATTTAGCATCCTCAAATGGGCACAAAGGAATTGCTGGTTATCTTGCTGAGTCGGTGCTAAGCGCACACTTGGAATCTCTGAATTTTGATAATCAAGAAAGTAAGGCTGCAGATACTTGTGGAGAAAAAGCAGTACAAACAGCTGCTGAGCGTGTCCCCACTCCACACGAGGGCAATGATATGTATACATTGTCCCTCAAGGATTCATTAGCAGCCATATCTAATGCTACCCAAGCTGCTGCTCGTATTCACGAGGTTATGAGGGTGCAGTCCTTCCAAAGAAAGCAATTGGAGGTGAACGATAAATTCGACGTTTCAAATGATCAGGCTTTTTCACTTTTACCAGTTAAGAGACGTAATCCGGGATCACATGATGATGAGCATGCTGCTGCCATTCACATACAAAACAAGTTCCGCAGTTGGAAGGGCAGAAAAGATTTTCTAATAGTCCGACAGAGAATTGTTAAAATTCAGGCCCATGCAAGAGGCCATCAGGTGCGAAACAACTATCGGAAAATTTTGTGGTCAGTGGGAATTTTGGAGAAGGTTATTTTGCGTTGGAGAAGAAAAGGAAGTGGTTTACGAGGATTTAGGCCAGAAGCAACTGCTGAGGACTGCAGTAGGCAAAATACATCGTTGACAGAGGATGATGACGACTTTTTAAAACAAGGCAGAAAGCAAATAGAAGAAAGGTTGCAGAAGGCTCTTGCTAGAGTCAAGTCTATGGTGCAATATCCTGAGGCAAGGGATCAATATCGCAGGCTGTTAAATGTTGTCATGGAGATGCAAGATATAAAGGTGAAAGATGGTGTTCTAGACAATGTAGATGAAACAGATGACTTTGATGACCTAATTGACATTAAAGCCCTATTGGATGAAGATGCTTCCACTCCTACTGCATCGGTGTAA 2046 42.52 MDPETQNDQSIQEYLQKMLPNTKRECYLHLISDGKVILEGKSNFAKKQPLLDAITTESLRMGDSFNQWMSRELGDVKEASMQSNSGTYWNSVENDVGQLFHIIDFSPSWAYEGSEIKVLVSGKFLKSPHEVENLKWCCMFGEVEVPADVIADGVLRCFTPIHKAGKVPFYVTRSNRLACSEVRDFEYRVKCIQDVDVMYDHSIKNQALVLRFVKLICLSCSDTLIADPNSSSDRSDYNKIRKLLEVDNSEWDQLIKPRWDESVSLESAKELLLQRLLKEKLHVWLLQKVREGGRGPSVLDEQGQGVIHFAAALNYDWALLPALVAGINVNFRDANGWTALHWAAFFGRERTVAALISLGAAPGALADPSLKYPSGRTPADLASSNGHKGIAGYLAESVLSAHLESLNFDNQESKAADTCGEKAVQTAAERVPTPHEGNDMYTLSLKDSLAAISNATQAAARIHEVMRVQSFQRKQLEVNDKFDVSNDQAFSLLPVKRRNPGSHDDEHAAAIHIQNKFRSWKGRKDFLIVRQRIVKIQAHARGHQVRNNYRKILWSVGILEKVILRWRRKGSGLRGFRPEATAEDCSRQNTSLTEDDDDFLKQGRKQIEERLQKALARVKSMVQYPEARDQYRRLLNVVMEMQDIKVKDGVLDNVDETDDFDDLIDIKALLDEDASTPTASV 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19316348 19320182 - CmPI595203_10g016900.1 Cmu10g1690 427220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1690 681 Gene3D Immunoglobulins 95 191 IPR013783 -
Cmu10g1690 681 Gene3D - 504 553 - -
Cmu10g1690 681 ProSiteProfiles Ankyrin repeat region circular profile. 335 360 - -
Cmu10g1690 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 556 IPR027417 -
Cmu10g1690 681 ProSiteProfiles Ankyrin repeat profile. 335 367 IPR002110 GO:0005515(InterPro)
Cmu10g1690 681 ProSiteProfiles IQ motif profile. 506 535 - -
Cmu10g1690 681 Gene3D - 226 398 IPR036770 -
Cmu10g1690 681 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 41 640 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cmu10g1690 681 Pfam IQ calmodulin-binding motif 507 526 IPR000048 GO:0005515(InterPro)
Cmu10g1690 681 Pfam IQ calmodulin-binding motif 531 550 IPR000048 GO:0005515(InterPro)
Cmu10g1690 681 SUPERFAMILY Ankyrin repeat 281 396 IPR036770 -
Cmu10g1690 681 ProSiteProfiles IQ motif profile. 530 553 - -
Cmu10g1690 681 SMART ANK_2a 374 403 IPR002110 GO:0005515(InterPro)
Cmu10g1690 681 SMART ANK_2a 335 364 IPR002110 GO:0005515(InterPro)
Cmu10g1690 681 SMART iq_5 505 527 IPR000048 GO:0005515(InterPro)
Cmu10g1690 681 SMART iq_5 528 550 IPR000048 GO:0005515(InterPro)
Cmu10g1690 681 FunFam Calmodulin-binding transcription activator 2 505 553 - -
Cmu10g1690 681 SUPERFAMILY E set domains 102 188 IPR014756 -
Cmu10g1690 681 Pfam Ankyrin repeats (3 copies) 308 397 IPR002110 GO:0005515(InterPro)
Cmu10g1690 681 FunFam Calmodulin-binding transcription activator 2 95 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1690 K21596 - - vvi:100247418 787.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0452 Cmu-Chr6:5098588 Cmu10g1690 Cmu-Chr10:19316348 6.00E-80 dispersed
Cmu09g1524 Cmu-Chr9:28489002 Cmu10g1690 Cmu-Chr10:19316348 9.30E-144 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g1690 . 46 673 CAMTA Transcription Factor Family AT2G22300 53.2 2.9e-173 606.3
Cmu09g1524 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.0e-277 953.4
Cmu10g1691 . 76 212 CAMTA Transcription Factor Family AT5G64220 72.5 1.4e-53 208.8
Cmu06g0212 . 6 939 CAMTA Transcription Factor Family AT1G67310 52.0 5.6e-252 867.8
Cmu06g0452 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
Cmu06g0452 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.6 2.6e-192 669.5
Cmu09g1524 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.0e-277 953.4
Cmu10g1691 . 76 212 CAMTA Transcription Factor Family AT5G64220 72.5 1.4e-53 208.8
Cmu10g1690 . 46 673 CAMTA Transcription Factor Family AT2G22300 53.2 2.9e-173 606.3
Cmu06g0212 . 6 939 CAMTA Transcription Factor Family AT1G67310 52.0 5.6e-252 867.8
Cmu06g0452 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.6 2.6e-192 669.5
Cmu06g0452 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006128 0 6 0 0 0 2 1 1 2 0 1 1 1 0 0 1 2 2 1 2 0 1 1 1 3 0 1 3 5 0 38