Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1691 ATGAAACGATTTGCTAACAAGCAATCAACCTTATTTGATCATCAGAATCAGATCAATGGCATTGAAAATCAGTTGCTGTTAAGATGTGGAGAGATTAAGCGTTGGGAATCCGATCAATGCACCAACTATTCTCAATTTTCCTTCAAACCAGTCGTCGGCAAATGCTTTGACTTTATTCTACTCAAATTCAGCTCGTCTTCAATCGAGCACCAGAACATGGCAGAAATAGATATCGAACGAATCCTTTTAGAAGCAAAACATCGATGGCTACGCCCGGCTGAAATATGTGAAATTCTCAAAAACTACGATAAATTTTCTATTGCTTCAGAGCCTGCTAATATGCCTCCAAGTGGTTCACTTTTTCTTTATGATCGAAAGGTGGTAAGATACTTCCGCAAGGATGGACATAATTGGAGGAAGAAGAAAGGAAAGGCGGTAAAGGAAGCTCACGAGAGGCTCAAGGCTGGAAGTGTGTATGTGCTGAATTGCTACTATGCACATGGGGAAGAAAATGAAAATTTTCAGAGGCGCACTTATTGGATGCTGGAAGAGGATCTATCAAACATTGTTCTTGTCCACTATCGGGAAGTGCAGATTAGTAGAGGAAATTTCAATCGTAATAGGGGGACTGATGAAGCTGCTCTATTCTCTCGAGAATTTGAAGATACTAAGAACCATCCAGAAATGGGCGCTTCTAACTCCTCTAGTTTTCATCCATCTAATTATAAAATGCTTTCAAAAACTGCTGAAACTAGCCTGAACAGTGCCCAGGTATCAGAATATGAAGATGCTGAATCAGAATACGGTAACCGAGAAAGTACAGTTTTCCATTCTTTTCTTGGATTACAACAGCTGAAAATGGAGAGTAATAGTGCTGATCTCTGTGATTCGAAGTATCCTATATCATTATCAGATATTTATCAAGAAGACTTTACAGCCTTTGGTGGGAATGGCTTTCCGACTACATCGGATAGAAGTAAATATAGCAATAGTGTTGGATTCATTTACGAGCCCCACAGAAAACTTTGTTTTTCTTCTGAAAACGTCTTGGAAAGTGGTACTACTGGAATATATTCATCCCATCTGCAGCCATCATTTTTTACATCTCAACCTCAAATTTTAGACGATGTTCCAAAACAAGGTGATGAAATAGTGGGACTGCTCTCCTCTGATAAATGTAAAAGGACAGTGTTTAATAATCATCTACATTCCCAGGAAGATTGTCAGGAATTACTTGTGAAATCATCTGGCCAACGAGCCTCTGATCTACCCAGGTCCATAGACGCTAGCACTTCACATTTATAA 1305 39.31 MKRFANKQSTLFDHQNQINGIENQLLLRCGEIKRWESDQCTNYSQFSFKPVVGKCFDFILLKFSSSSIEHQNMAEIDIERILLEAKHRWLRPAEICEILKNYDKFSIASEPANMPPSGSLFLYDRKVVRYFRKDGHNWRKKKGKAVKEAHERLKAGSVYVLNCYYAHGEENENFQRRTYWMLEEDLSNIVLVHYREVQISRGNFNRNRGTDEAALFSREFEDTKNHPEMGASNSSSFHPSNYKMLSKTAETSLNSAQVSEYEDAESEYGNRESTVFHSFLGLQQLKMESNSADLCDSKYPISLSDIYQEDFTAFGGNGFPTTSDRSKYSNSVGFIYEPHRKLCFSSENVLESGTTGIYSSHLQPSFFTSQPQILDDVPKQGDEIVGLLSSDKCKRTVFNNHLHSQEDCQELLVKSSGQRASDLPRSIDASTSHL 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19326328 19332266 - CmPI595203_10g016910.1 Cmu10g1691 427221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1691 434 Pfam CG-1 domain 84 196 IPR005559 GO:0003677(InterPro)
Cmu10g1691 434 ProSiteProfiles CG-1 DNA-binding domain profile. 78 203 IPR005559 GO:0003677(InterPro)
Cmu10g1691 434 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 77 385 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cmu10g1691 434 SMART CG_1_2 81 198 IPR005559 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1691 K21596 - - cit:102621892 362.459
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g1690 . 46 673 CAMTA Transcription Factor Family AT2G22300 53.2 2.9e-173 606.3
Cmu09g1524 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.0e-277 953.4
Cmu10g1691 . 76 212 CAMTA Transcription Factor Family AT5G64220 72.5 1.4e-53 208.8
Cmu06g0212 . 6 939 CAMTA Transcription Factor Family AT1G67310 52.0 5.6e-252 867.8
Cmu06g0452 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
Cmu06g0452 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.6 2.6e-192 669.5
Cmu09g1524 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.0e-277 953.4
Cmu10g1691 . 76 212 CAMTA Transcription Factor Family AT5G64220 72.5 1.4e-53 208.8
Cmu10g1690 . 46 673 CAMTA Transcription Factor Family AT2G22300 53.2 2.9e-173 606.3
Cmu06g0212 . 6 939 CAMTA Transcription Factor Family AT1G67310 52.0 5.6e-252 867.8
Cmu06g0452 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.6 2.6e-192 669.5
Cmu06g0452 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006128 0 6 0 0 0 2 1 1 2 0 1 1 1 0 0 1 2 2 1 2 0 1 1 1 3 0 1 3 5 0 38