Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu10g1692 | ATGGGTATTTGCCCATGTTCGAAAATATGTTTATCTGAGTTGTTTTTACTCCACAATCAAGTTAACTGCCATCTCTTTTCGAGAAGAGCGTGCTATTCTTCCTTGTCGGTGTTGTTGGTGGAAGACCACGTGTTTGATGAAAGTCCAGTAGCTCAAATTAAAGTTCTTCCTGAAATTAACGTCAGAAGAAACTGTTCAATTCTTAGGAGGAAGGGGAAGCTCTTTCCTTTAGTTGTTCGGGTTCTAAAATCTTTGAACTGGAGGGTTGCGAGGCAGATAAGATTCTCAACAGCCGTGAAACGTTATGGGCATTTGAACTCTCTATGTGCATTTAGAATTATGGTTCATGTATTTGCATTAGCGGAAATGCGGATGGAAGTCTACTCTCTTCTTAAAGATATCGTTTGCCACACTAGGAAGGCTAAGCAAGATTTATCTGGATTGTTCCCATTTCTTATGGACTCGAATTATGATGTGGAGAAGTCAAGTATCGTGCTTGACCTGCTTATAAAGGTTTTCTCTGGAAATTCAATGGTTGAGAATGCTGTGGAAGTGTTTATTCAAGCCAAGAAAATGGGAATCATGCCAGATATTTCGTCATGCAATTTTTTGCTCAAGTGCTTGGGTGAAGCAAACAGAGAGGATTTTGTTAGATGTTTGTTTGAGGATTTGAAGACTTCTGGCCCAAATCCTACTGTATATACCTACACAATTATGATGAACTTCTTTTGCCAAGGATTAAATGGGCGTGATGTCAACATTAAAGAAGCAACCTTTCTTCTAGAGGAATTAATGAGGAGTGGTGAGAGACCCACTGTTGTAACGTACAGCATTTACATCCGTGCACTTTGTAAAGTTGTTTCTGGTCAGTCTGCTTTGGACTTCATTCAAGATCTGAGACTCAAGAACCAACCTCTTAATGCTTATTGTTACAATCCAATTCTTCATAAATTTTGTCAAGAGGGTAAGACGGAGGAAGCTATGAAGGTTTTGCAGGAAATGATGGGTTATGGAATACTACCAGATGCATGTAGTTATAGTATTTTGGTTGATGGGTTCTGCAAGAGAGGGGAAAATGATAAAGGTCTCAATCTGATTGAGGAAATGGAACTTTGTCAACTAAAACCATCCCTAGTCACCTATTCATCTCTGATTTATGGTCTTTGTAAGAGAGGATTGATGGATCTCTCCCTAGATATTTTTCGTAAACTTCAGAAACTTGGTTACAAATATGACTTGGTTGTTTATGACATTTTGATCAGAGGATTTTTTTCTCACGATGATATGGAGTATGCTAAAAAACTTTTGGATGAGATGGTAAATGATTTATGTCCTGATGCTTTTAATTTTAATGCAATGATTCGTTGGCTTTGCAAGATGGGACACTTTGATAAAGCCATAGGACTTCTCAATCTCATGCTAAAATATTGTGGTTTGGCTGATACGATGACTTGCAATTTTATTGTAGATGGGTACTGCAGAGAAGGGAACTTGGAGGAGGCCCTGAAATTAATGATTTATATGAAAGATCATGGTATCATGCCTAATTCGTACACATTCAATATAATCATGAAGAGATTGTGTGAGGAAGGAAGACTGGAAAAAGTGTGGGAGCTTTTCCCTGCAATGCTAAAGTTGAATATACTTCCAGGGTTGGTACATTATAGTACTCTTATTGATGGTTTTGCAAAGCATTCTAATATGAAAAAGGCATTAATGCTGTATGAAAGAATGGAAAGGCTAGGAGTTCCACCAGACACTGTCGCTTCTACTATCATTATTAATATGTTATGCCAGAGGAATGAAACATATCGGGCATATAAATTATTTAAGGAATTGATTGTAAAAGGTATGAATCTAGATAAGATTCTGTACACTTCTATGATAGCTGGATTTAGTAGAACGGGAGACATGAAGAAGGCATGTGCTTTGTTTAATAAAATGTCAAATGAAGGATGTTCACCTACTGTTGTTACTTACACTTGTTTAATTGATGGATTCTTCAAGTTAAGACGCTTGGATCTTGCAAGCTTTTTGGTTGATGATATGAAGAGAAATAATCTTACACCAGATGTGATAGTTTACACGGTTCTTATTGTTGGGCTGCTTAGACTTGGAAAGATTGAAAAAGCACGTGAACTGGTTGATGAAGTGAGAGCGGGTGGTATAATTTCAGAAGATGCTACTTTTCAAATGCTGGCTTCTAGCATTGTTAATCAGAAGTTGGAGTGCTAA | 2235 | 37.49 | MGICPCSKICLSELFLLHNQVNCHLFSRRACYSSLSVLLVEDHVFDESPVAQIKVLPEINVRRNCSILRRKGKLFPLVVRVLKSLNWRVARQIRFSTAVKRYGHLNSLCAFRIMVHVFALAEMRMEVYSLLKDIVCHTRKAKQDLSGLFPFLMDSNYDVEKSSIVLDLLIKVFSGNSMVENAVEVFIQAKKMGIMPDISSCNFLLKCLGEANREDFVRCLFEDLKTSGPNPTVYTYTIMMNFFCQGLNGRDVNIKEATFLLEELMRSGERPTVVTYSIYIRALCKVVSGQSALDFIQDLRLKNQPLNAYCYNPILHKFCQEGKTEEAMKVLQEMMGYGILPDACSYSILVDGFCKRGENDKGLNLIEEMELCQLKPSLVTYSSLIYGLCKRGLMDLSLDIFRKLQKLGYKYDLVVYDILIRGFFSHDDMEYAKKLLDEMVNDLCPDAFNFNAMIRWLCKMGHFDKAIGLLNLMLKYCGLADTMTCNFIVDGYCREGNLEEALKLMIYMKDHGIMPNSYTFNIIMKRLCEEGRLEKVWELFPAMLKLNILPGLVHYSTLIDGFAKHSNMKKALMLYERMERLGVPPDTVASTIIINMLCQRNETYRAYKLFKELIVKGMNLDKILYTSMIAGFSRTGDMKKACALFNKMSNEGCSPTVVTYTCLIDGFFKLRRLDLASFLVDDMKRNNLTPDVIVYTVLIVGLLRLGKIEKARELVDEVRAGGIISEDATFQMLASSIVNQKLEC | 744 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 19373429 | 19375663 | - | CmPI595203_10g016920.1 | Cmu10g1692 | 427222 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu10g1692 | 744 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 307 | 341 | IPR002885 | - | |
| Cmu10g1692 | 744 | Gene3D | Tetratricopeptide repeat domain | 58 | 222 | IPR011990 | GO:0005515(InterPro) | |
| Cmu10g1692 | 744 | Gene3D | Tetratricopeptide repeat domain | 371 | 441 | IPR011990 | GO:0005515(InterPro) | |
| Cmu10g1692 | 744 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 377 | 411 | IPR002885 | - | |
| Cmu10g1692 | 744 | Gene3D | Tetratricopeptide repeat domain | 541 | 743 | IPR011990 | GO:0005515(InterPro) | |
| Cmu10g1692 | 744 | Gene3D | Tetratricopeptide repeat domain | 442 | 540 | IPR011990 | GO:0005515(InterPro) | |
| Cmu10g1692 | 744 | Gene3D | Tetratricopeptide repeat domain | 223 | 370 | IPR011990 | GO:0005515(InterPro) | |
| Cmu10g1692 | 744 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 551 | 585 | IPR002885 | - | |
| Cmu10g1692 | 744 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 516 | 550 | IPR002885 | - | |
| Cmu10g1692 | 744 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 656 | 690 | IPR002885 | - | |
| Cmu10g1692 | 744 | NCBIfam | pentatricopeptide repeat | 554 | 587 | IPR002885 | - | |
| Cmu10g1692 | 744 | NCBIfam | pentatricopeptide repeat | 518 | 550 | IPR002885 | - | |
| Cmu10g1692 | 744 | NCBIfam | pentatricopeptide repeat | 624 | 657 | IPR002885 | - | |
| Cmu10g1692 | 744 | NCBIfam | pentatricopeptide repeat | 450 | 476 | IPR002885 | - | |
| Cmu10g1692 | 744 | NCBIfam | pentatricopeptide repeat | 345 | 377 | IPR002885 | - | |
| Cmu10g1692 | 744 | NCBIfam | pentatricopeptide repeat | 484 | 516 | IPR002885 | - | |
| Cmu10g1692 | 744 | NCBIfam | pentatricopeptide repeat | 309 | 343 | IPR002885 | - | |
| Cmu10g1692 | 744 | NCBIfam | pentatricopeptide repeat | 658 | 692 | IPR002885 | - | |
| Cmu10g1692 | 744 | NCBIfam | pentatricopeptide repeat | 414 | 441 | IPR002885 | - | |
| Cmu10g1692 | 744 | NCBIfam | pentatricopeptide repeat | 693 | 723 | IPR002885 | - | |
| Cmu10g1692 | 744 | NCBIfam | pentatricopeptide repeat | 379 | 412 | IPR002885 | - | |
| Cmu10g1692 | 744 | Pfam | Pentatricopeptide repeat domain | 679 | 724 | IPR002885 | - | |
| Cmu10g1692 | 744 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 621 | 655 | IPR002885 | - | |
| Cmu10g1692 | 744 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 342 | 376 | IPR002885 | - | |
| Cmu10g1692 | 744 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 446 | 476 | IPR002885 | - | |
| Cmu10g1692 | 744 | SUPERFAMILY | HCP-like | 427 | 653 | - | - | |
| Cmu10g1692 | 744 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 254 | 612 | - | - | |
| Cmu10g1692 | 744 | Pfam | PPR repeat family | 550 | 599 | IPR002885 | - | |
| Cmu10g1692 | 744 | Pfam | PPR repeat family | 481 | 528 | IPR002885 | - | |
| Cmu10g1692 | 744 | Pfam | PPR repeat family | 196 | 245 | IPR002885 | - | |
| Cmu10g1692 | 744 | Pfam | PPR repeat family | 307 | 355 | IPR002885 | - | |
| Cmu10g1692 | 744 | Pfam | PPR repeat family | 623 | 669 | IPR002885 | - | |
| Cmu10g1692 | 744 | Pfam | PPR repeat family | 376 | 423 | IPR002885 | - | |
| Cmu10g1692 | 744 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 412 | 442 | IPR002885 | - | |
| Cmu10g1692 | 744 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 481 | 515 | IPR002885 | - | |
| Cmu10g1692 | 744 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 691 | 725 | IPR002885 | - | |
| Cmu10g1692 | 744 | Pfam | PPR repeat | 442 | 473 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu10g1692 | - | - | - | - | 0.0 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g1067 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla10g00855 | Cam10g0875 | Cec10g0905 | Cco10g0858 | Clacu10g0900 | Cmu10g1692 | Cre10g1063 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0003935 | 0 | 8 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 26 |