Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1708 ATGTCATCGGAGAATTCATCCGAAGAACCGGCCATAGACAGCCGTAGTCGCCGATCAATCAGTGCAGTAGAGAGAATGATGAAGCTGCAAACATATGCGGGGATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGGCAATTTTACCCAGCATTGGTCTATTTATCGACTTCCAAGATAAATCTAGTGCTTCTTCTCAATATGGGTTTAGTCATCATGTGCATTTTGTGGCAGCTAACAAAAAAAATATTTCTCGGTTCTCTTAGAGAAGCAGAAGTTGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATTTTCCGCCAAGATTTTTCTGTTGCATTCCTGGGTATGGTTACAGCTCTGTTGTTGATCAAAGCTCTGCATTGGCTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATAGTTTCTTTCTTAGGCTTCCTCTTTGTTCTAGATAGTCTGTTTTTTTATAATTCGATAGAATCTCTGATACAGACAAAGAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACGACAGCTGTGTCAACATTTGTAAAATATATTTTCTATGTTAGTGATGTGCTCATGGAGGGACAATGGGAAAGGAAGCCCGTCTATACATTTTACTTGGAGCTTATCCGGGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGTGTGCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGCATTGCAGATTACATCCGTTATAGAAAGATCACTTCAAATATGAATGATCGTTTTCCAGATGCAACGCCAGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTGCATTGCCTCCGATCCTGGTTGGAGCGACAGCATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCGGAGCAGGCGGTCATCATGGAGTGCAGTCTGATGCTAACCAACAAGGAACAGGAACTACTAGTTCATCTGCACAAGGTACCAGTGGTACGGGTGATGCTAATGATAATTTGAGTCGTCATCAGGCTAGAGTCCGAGCTGCTGCAGCAGCTGCTTCAATATATGAGAAATCATATGTTTATCCTTTTGCGAGCACATTAGTATGGTCTCCTGGATATGCAGTAGTTCCTCAGGTTGAAAGACCTATGCCTGACTCCATCAATACAGAAACGAATGGAGAACAAGCTCCCAATGGACATCCACAATACTTTTCATTTCCTGGCGGCCCTTCAAACCTATCCTTCACTCAATTTCCCCAAAATCTCTTTGTTCCTTTTCAGCCACGAGAGGGCACTGGAAACAATACAGATGGATCGGGCAGTAGTCTAAATGTATCAGGCTCACAGCTTGAACCTCAAGAAAGATTTCTTCAACAACAGATTGAGATCCTTCAGAATCAGCTGCAACTTCTCCGTAAACCAAAAATTGAGGAAAACTCAAGAGCAAATGAAGCAGATAAGAAAGGGAAAAGCGTAACATCCTCTGCACCATCATCGTCTTCATCAGATTCTCATCGGCCTGGAGAAACCGAAAGTCTGGTAACCAGTGTCGTGCTAATCTCGGTTTCTATTGTTCATTCATACGCCTTGATCGTCAATGTCTTATGA 1800 42.56 MSSENSSEEPAIDSRSRRSISAVERMMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTKKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSGAGGHHGVQSDANQQGTGTTSSSAQGTSGTGDANDNLSRHQARVRAAAAAASIYEKSYVYPFASTLVWSPGYAVVPQVERPMPDSINTETNGEQAPNGHPQYFSFPGGPSNLSFTQFPQNLFVPFQPREGTGNNTDGSGSSLNVSGSQLEPQERFLQQQIEILQNQLQLLRKPKIEENSRANEADKKGKSVTSSAPSSSSSDSHRPGETESLVTSVVLISVSIVHSYALIVNVL 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19771585 19780381 + CmPI595203_10g017080.1 Cmu10g1708 427238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1708 599 MobiDBLite consensus disorder prediction 365 401 - -
Cmu10g1708 599 SUPERFAMILY RING/U-box 297 362 - -
Cmu10g1708 599 MobiDBLite consensus disorder prediction 371 401 - -
Cmu10g1708 599 MobiDBLite consensus disorder prediction 492 512 - -
Cmu10g1708 599 PANTHER RING ZINC FINGER PROTEIN 18 362 IPR050731 -
Cmu10g1708 599 SMART ring_2 317 354 IPR001841 -
Cmu10g1708 599 Pfam Ring finger domain 316 355 IPR001841 -
Cmu10g1708 599 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 289 364 - -
Cmu10g1708 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 360 IPR013083 -
Cmu10g1708 599 ProSiteProfiles Zinc finger RING-type profile. 317 355 IPR001841 -
Cmu10g1708 599 MobiDBLite consensus disorder prediction 539 574 - -
Cmu10g1708 599 CDD RING-H2_synoviolin 314 355 - -
Cmu10g1708 599 MobiDBLite consensus disorder prediction 553 574 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1308 Cmu-Chr9:18330347 Cmu10g1708 Cmu-Chr10:19771585 1.30E-17 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1708 K10601 - csv:101215351 962.6