Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1709 ATGTCGGTGATGTTGGGTTCTTGCTCTTCTTCTCTGTGGATCGTTTTCGTGTTGGGTTTTGTTTCCTTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTACTACAGAGTTGGGATCCTACACTTGTTAATCCTTGCACATGGTTCCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGATCTTGGAAATGCCAATCTATCTGGCACGTTGGTTCCACAACTTGGTGATCTTAAGAATTTGCAATATCTGGAGCTTTACAGTAACAATATTAGTGGAGAAATTCCCTCGGAGCTTGGGCTTTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCATTCACACTTGGCGAGCTTGAAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTATCAGGAACCATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTTTCATACAACAAGCTAACTGGAGATATCCCGGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAACCTTCTCAATGAATCTGCTGCACATACTCCACCACCTCCTCTACCTTCTTCACCAAGTCCTGTATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCTCCTGCCGTTGCGGTTGCTCTGTGGCGACGGAAGAAGCCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTTCGTGAACTACAAGTTGCAACGGATCATTTTAGCAACAAACATATTCTAGGGAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTCAAAGAGGAGCGTTCACAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTGCTCCGCCTGCGTGGCTTTTGTATGACACCAACTGAGCGGTTGTTGGTCTATCCATTTATGGTTAACGGAAGTGTAGCATCATGTTTGAGAGAACGCCGAGAAGCACAACCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGAGCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATCGTGATGTGAAAGCTGCGAACATTTTACTTGACGAGGAGTATGAAGCTGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCAGTACGAGGAACAATTGGGCATATAGCTCCTGAATACCTTTCGACTGGAAAGTCTTCTGAAAAGACTGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGACGACGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGATCTTGCGGGAAAATATCCCGACGACGAAGTCGAGCAGCTTATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACAGAACGGCCTAAGATGTCAGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCATCAAGACTTAAGCCGCAATCCCCACCCAAGTACGACTTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAATTGTCCGGTCCAAGATGA 1842 45.17 MSVMLGSCSSSLWIVFVLGFVSLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGDLKNLQYLELYSNNISGEIPSELGLLTNLVSLDLYLNNLTGPIPFTLGELEKLRFLRLNNNSLSGTIPMSLTNVKSLQVLDLSYNKLTGDIPVNGSFSLFTPISFAHNLLNESAAHTPPPPLPSSPSPVSGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERREAQPPLNWLNRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDLSRNPHPSTTWILDSTAEIPPDELSGPR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19803611 19810680 + CmPI595203_10g017090.1 Cmu10g1709 427239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1709 613 SUPERFAMILY L domain-like 28 203 - -
Cmu10g1709 613 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 613 - -
Cmu10g1709 613 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
Cmu10g1709 613 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
Cmu10g1709 613 ProSiteProfiles Protein kinase domain profile. 290 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1709 613 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524(InterPro)
Cmu10g1709 613 Pfam Leucine Rich Repeat 94 114 IPR001611 GO:0005515(InterPro)
Cmu10g1709 613 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Cmu10g1709 613 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cmu10g1709 613 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cmu10g1709 613 ProSiteProfiles Leucine-rich repeat profile. 94 116 IPR001611 GO:0005515(InterPro)
Cmu10g1709 613 Pfam Protein tyrosine and serine/threonine kinase 293 564 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g1709 613 SMART serkin_6 290 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1709 613 SUPERFAMILY Protein kinase-like (PK-like) 269 565 IPR011009 -
Cmu10g1709 613 Gene3D Ribonuclease Inhibitor 26 206 IPR032675 -
Cmu10g1709 613 FunFam Somatic embryogenesis receptor-like kinase 1 367 584 - -
Cmu10g1709 613 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Cmu10g1709 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g1709 613 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cmu10g1709 613 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Cmu10g1709 613 MobiDBLite consensus disorder prediction 580 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0175 Cmu-Chr6:1813950 Cmu10g1709 Cmu-Chr10:19803611 2.00E-29 dispersed
Cmu08g0297 Cmu-Chr8:7323144 Cmu10g1709 Cmu-Chr10:19803611 1.70E-227 dispersed
Cmu09g1489 Cmu-Chr9:27124074 Cmu10g1709 Cmu-Chr10:19803611 3.70E-210 dispersed
Cmu10g1709 Cmu-Chr10:19803611 Cmu11g0516 Cmu-Chr11:5615607 1.00E-131 dispersed
Cmu10g1709 Cmu-Chr10:19803611 Cmu07g1697 Cmu-Chr7:32242753 3.40E-127 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75842 PF00069 Pkinase 2.30E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1709 K13416 - csv:101216389 1129.01