Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1724 ATGGATAACTTATGCTGCTTCAATTCTGTCTATTCTCAGTTTGTAGGAGGACGTTCGTCATGTAGCTCTGGAAAGGGCAGGGGCAATTTATGCCCTGCTAGGTATGGCTTTAGCCTAGTAAAAGGCAAAGCAAATCATCCCATGGAGGACTATCATGTTGCTAAATTTATTACCGTGCATGGCCGGGAGCTAGGCCTTTTTGCTATATATGATGGACATTTAGGAGATAGCGTACCTGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGAGGAATTCTGGTCGAATCCCGGTAGCTCTATCTTTAAGGCTTACGAGAAGACAGACCAAGCAATACTCTCACACAGTCCTGACTTAGGAAGAGGTGGATCCACCGCTGTCACTGCAATTTTGATAAACGGTCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGTGCAGTCCTTTCGAAAAAAGGGCAGGAGGTGCAAATGTCTATTGATCACGAGCCAAACACCGAGCGAGGAAGTATTGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGAGTGAACGGGCAGCTTGCAGTTTCTCGAGCATTTGGCGACAAGAACCTCAAGACACACTTGCGATCTGATCCTGACATAACAAATGCCGATGTTGACTCTGACACTGAGCTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTCATGACAAATCAAGAAGCCGTGGATATAGCAAGAAAAACCAAGGATCCCCAGAGAGCAGCAAAGCAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGACGACATCTCAATCATCGTAGTTCGTTTCAAAGGGTAA 852 44.95 MDNLCCFNSVYSQFVGGRSSCSSGKGRGNLCPARYGFSLVKGKANHPMEDYHVAKFITVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPGSSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKKGQEVQMSIDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDITNADVDSDTELLILASDGLWKVMTNQEAVDIARKTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20087344 20091207 + CmPI595203_10g017240.1 Cmu10g1724 427254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1724 283 FunFam Probable protein phosphatase 2C 39 26 282 - -
Cmu10g1724 283 Gene3D - 30 283 IPR036457 -
Cmu10g1724 283 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Cmu10g1724 283 PANTHER PROTEIN PHOSPHATASE 34 279 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu10g1724 283 SMART PP2C_SIG_2 45 281 IPR001932 -
Cmu10g1724 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Cmu10g1724 283 CDD PP2Cc 34 281 IPR001932 -
Cmu10g1724 283 SUPERFAMILY PP2C-like 30 282 IPR036457 -
Cmu10g1724 283 SMART PP2C_4 30 279 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0702 Cmu-Chr6:8191998 Cmu10g1724 Cmu-Chr10:20087344 1.00E-19 dispersed
Cmu10g1724 Cmu-Chr10:20087344 Cmu11g1788 Cmu-Chr11:29998819 9.50E-85 dispersed
Cmu10g1724 Cmu-Chr10:20087344 Cmu11g1415 Cmu-Chr11:26375805 9.10E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1724 K17506 - csv:101214223 548.895