Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1733 ATGTACCATCTACGATGGAAAGACCTCCAAGCTTTTGCAGCCATCGACAACCATGTGAAACCCTATACCACAACGGTTCTTGGTACTGCTTCCAAAGTCCTCTCCATCATCAAACCTTCTAAACTCTATCTAACCACCAACCGCTTCGTCCGAGATGGAGCTATCAGATCTTCAAATTCTAATGTCGATGTCGATGTTACCATTGCCAACGATACCATCTTTGGCATCAATGGCCAGCCAATATTTTCGGTTGATGAGGCTGACTTGGACCGTCCGACGGAAGGGTTTTCATCCATTGAGGAAGCTATTGAAGATGTTCGGAAGGGAAAGATGGTGGTGGTTGTTGACGATGAAGATCGAGAAAACGAAGGAGATCTTATAATGGCGGCTGAGGCGGTGACGACAGAGGCGATGGCTTTCATTGTAAAGCATGGAACGGGGATTGTTTGTGTGGGGATGAAAGGAGAAGATTTAGAGAGGCTACAGATTCCATTAATGGTGGATCACAAGGATAACCAAGAAATGCTCTCTACTGCTTTTACTATCACTGTGGATGGAAGAGAGGGCACAACGACGGGAGTTTCAGCGGAGGATAGGGTGGCGACGGTGGTGGCATTAGCATCAAAACACTCAATACCATATGATTTTAAACGACCGGGTCATATCTTTCCCCTCAAATATAGAGAAGGAGGGGTTTTGAGAAGGCCTGGCCACACGGAAGCCTCCGTCGATCTAGCAGAGCTTGCTGGACTCTTTCCCGCCGGAATTCTCTGTGAGATCGTCGACGACGACGATGGCTCCATGGCTAGGCTCCCAAAGCTTCGCCAGTTTGCTCAACATCATAGCCTCAAAATTATCTCCATTGCTGACTTGATCAGGTATAGGAGAAAGAGGGAGAAATTAATTGAGCGCATTGGAGATCCTACAAGGATTCCGACTTCATGGGGACCATTCAATGCATACTGTTACAAGTCTACATTAGATGGCATGGAACATATCGCAATGGTTAAGGGTAATATTGGTGATGGCGAAGAGATCTTAGTGAGGGTGCACTCAGAATGCTTGACAGGAGACATATTTGGATCAGCAAGATGTGACTGTGGAAAGCAACTAGGTTTGGCAATGCGAAAGATTGAGGAAGGTGAGAAAGGAGTGTTGGTTTATCTTAGAGGCCAAGAAGGAAGAGGCATTGGTTTGGGCAATAAGCTTCTTGCATATAATTTACAAGATGCTGGTAGAGACACTGTTCAAGCTAATCAAGATTTGGGATTGCCTGTTGATTCTAGAGATTATACCCTCGCTGCACAAATTATAAAGGATCTTGGGGTGAGAACAATGAGGCTAATGACAAATAACCCAGCAAAGTACATGGGGCTAAAGGGGTATGGGTTGGCAATTTCAGGCAGAGTTCCTCTTGTAACCCCAATTACAAAGGAAAATAAAAGATACCTTGAGACTAAGAGAGCCAAAATGGGTCATGACTATGGCTTAGAATTCAATGGTGTGTTAAGTGCTCTAATGAATGTCAATAAAAAATAA 1539 44.7 MYHLRWKDLQAFAAIDNHVKPYTTTVLGTASKVLSIIKPSKLYLTTNRFVRDGAIRSSNSNVDVDVTIANDTIFGINGQPIFSVDEADLDRPTEGFSSIEEAIEDVRKGKMVVVVDDEDRENEGDLIMAAEAVTTEAMAFIVKHGTGIVCVGMKGEDLERLQIPLMVDHKDNQEMLSTAFTITVDGREGTTTGVSAEDRVATVVALASKHSIPYDFKRPGHIFPLKYREGGVLRRPGHTEASVDLAELAGLFPAGILCEIVDDDDGSMARLPKLRQFAQHHSLKIISIADLIRYRRKREKLIERIGDPTRIPTSWGPFNAYCYKSTLDGMEHIAMVKGNIGDGEEILVRVHSECLTGDIFGSARCDCGKQLGLAMRKIEEGEKGVLVYLRGQEGRGIGLGNKLLAYNLQDAGRDTVQANQDLGLPVDSRDYTLAAQIIKDLGVRTMRLMTNNPAKYMGLKGYGLAISGRVPLVTPITKENKRYLETKRAKMGHDYGLEFNGVLSALMNVNKK 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20648383 20655653 + CmPI595203_10g017330.1 Cmu10g1733 427263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1733 512 PANTHER GTP CYCLOHYDROLASE II-RELATED 96 493 - GO:0008686(PANTHER)|GO:0009231(PANTHER)|GO:0009507(PANTHER)
Cmu10g1733 512 NCBIfam GTP cyclohydrolase II 309 493 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cmu10g1733 512 Gene3D DHBP synthase 85 302 - -
Cmu10g1733 512 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 94 299 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cmu10g1733 512 Gene3D GTP cyclohydrolase II 303 474 IPR036144 -
Cmu10g1733 512 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 96 295 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cmu10g1733 512 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 95 493 IPR016299 GO:0009231(InterPro)
Cmu10g1733 512 Pfam GTP cyclohydrolase II 309 471 IPR032677 -
Cmu10g1733 512 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 100 294 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cmu10g1733 512 CDD GTP_cyclohydro2 301 494 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cmu10g1733 512 Hamap GTP cyclohydrolase-2 [ribA]. 300 497 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cmu10g1733 512 FunFam Riboflavin biosynthesis protein RibBA 304 474 - -
Cmu10g1733 512 SUPERFAMILY YrdC/RibB 96 302 IPR017945 -
Cmu10g1733 512 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 87 301 - -
Cmu10g1733 512 SUPERFAMILY RibA-like 302 473 IPR036144 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1733 K14652 - - csv:101222456 728.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1733 Cmu-Chr10:20648383 Cmu10g1734 Cmu-Chr10:20796716 1.40E-174 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g978 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00895 Cam10g0919 Cec10g0957 Cco10g0917 Clacu10g0948 Cmu10g1733 Cre10g1109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000665 2 1 3 4 3 3 2 3 3 3 3 3 4 3 3 3 3 5 3 3 3 3 3 4 4 3 2 7 7 3 99