Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1749 ATGACAAGACAAAAAATCCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGGAGAAGAGGACTATTCAAAAAAGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCCAGCTCAAGCATGCTGGAGTTATTGAGAAGACATAATATGCTACCAGAGTTGAGTAACTTTAGTCAACCTCCATCTCAGGGTTCACAGTTGGAAAAGAGTGCCCATGCTAAATTGACTGAGGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAAGGGAGAGGAGCTTCAAGGGCTTGGAATAGAAGAATTAAAGAAATTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAGTAGAGACCAAGGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTGAAGGAGAAGGAAGCTTTGCTAATGGAAGAGAATCAGAGACTGAGGAATAAAATGGAAACTTTGAATAGAGATCAGCAAGAAGAACAAGCAGTGGTTGTTATTGGTGGAAATTCTTTGGGGTCAAAGTCAAACACCACCAACAGCAGCTCCTCACCAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGTCTTTGA 663 38.91 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLELLRRHNMLPELSNFSQPPSQGSQLEKSAHAKLTEEFAAKTKELRHMKGEELQGLGIEELKKLEKLLEIGLNRVVETKDEKFLKEIGAVKEKEALLMEENQRLRNKMETLNRDQQEEQAVVVIGGNSLGSKSNTTNSSSSPNPNSQDYDDISLKLGL 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21565469 21572692 + CmPI595203_10g017490.1 Cmu10g1749 427279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1749 220 Pfam K-box region 88 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu10g1749 220 Coils Coil 149 183 - -
Cmu10g1749 220 MobiDBLite consensus disorder prediction 187 220 - -
Cmu10g1749 220 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu10g1749 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu10g1749 220 Coils Coil 123 143 - -
Cmu10g1749 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu10g1749 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu10g1749 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu10g1749 220 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu10g1749 220 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu10g1749 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu10g1749 220 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu10g1749 220 Gene3D - 15 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu10g1749 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu10g1749 220 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu10g1749 220 MobiDBLite consensus disorder prediction 188 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0995 Cmu-Chr8:22191298 Cmu10g1749 Cmu-Chr10:21565469 1.60E-24 dispersed
Cmu10g1749 Cmu-Chr10:21565469 Cmu11g1595 Cmu-Chr11:28268144 3.70E-20 dispersed
Cmu01g1782 Cmu-Chr1:31510940 Cmu10g1749 Cmu-Chr10:21565469 4.80E-47 wgd
Cmu10g1749 Cmu-Chr10:21565469 Cmu09g1571 Cmu-Chr9:29746175 2.30E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6977 PF01486 K-box 6.20E-16 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1749 - - - 0.0