Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1802 ATGGGTGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTCGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTAGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTATCCAGAGTGAAGATGAATTGCCAGAAGCGAAGTCTGTTTCTCTTTCCTCAGATGTCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAAGAAGACGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAGAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCCTAACAGCTAGTCGTAAATTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCGGTGGCACCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATGAGAGCTGACAAGGACGAAATGTGTATCCTTTCGAAAGCTCAAATCGATCTCGAAATAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCAGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 972 44.96 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAIQSEDELPEAKSVSLSSDVKQITGPKRSNVRKEEEEEDEEEEKEVERIERDARYDCHRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPPVAPSERRSSMLLLDDQQRASMRADKDEMCILSKAQIDLEIAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22511881 22517905 + CmPI595203_10g018020.1 Cmu10g1802 427332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1802 323 Gene3D - 146 222 IPR036388 -
Cmu10g1802 323 Coils Coil 266 303 - -
Cmu10g1802 323 FunFam Telomere repeat-binding factor 1 2 58 - -
Cmu10g1802 323 CDD SANT_TRF 6 56 - -
Cmu10g1802 323 Gene3D - 2 59 - -
Cmu10g1802 323 PANTHER SINGLE MYB HISTONE 4 1 317 IPR044597 GO:0003691(InterPro)
Cmu10g1802 323 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Cmu10g1802 323 MobiDBLite consensus disorder prediction 92 137 - -
Cmu10g1802 323 Pfam linker histone H1 and H5 family 151 207 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cmu10g1802 323 Coils Coil 120 142 - -
Cmu10g1802 323 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cmu10g1802 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cmu10g1802 323 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cmu10g1802 323 SMART sant 4 59 IPR001005 -
Cmu10g1802 323 SUPERFAMILY Winged helix DNA-binding domain 146 220 IPR036390 -
Cmu10g1802 323 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 146 214 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cmu10g1802 323 SMART h15plus2 143 209 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0128 Cmu-Chr7:1141798 Cmu10g1802 Cmu-Chr10:22511881 2.90E-06 dispersed
Cmu01g1710 Cmu-Chr1:30814810 Cmu10g1802 Cmu-Chr10:22511881 3.90E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6979 PF00538 Linker_histone 1.70E-07 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1802 K09422 - csv:101218411 483.411