Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g1823 | ATGGAATCTATAGGAGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCTTATACTGCTGAAGAGTCTGATTTCATGGCTAATTTGCTCAACAATTATTGTCTTCCAAATGAGCTAAATTCAGATTTAAGCTTGGAAATTCCATCTGCTTATTGGGTTTCTAATGAACCACCACCATCATTGACCATGGCAGCCATGGACGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATGTATGCCCTTCCACAAGCCAACAACAATAATCATCCTTACACTGTCACTGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCTTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCCGGAATGCTAATTGCTTGGACGAAGATAACGGTTCGAATATCCGAAAAACAAGACAATGCAGGCTACAACACTCCCCTGCTGACCCTACTGACCCTGCTGCTACACTTGTTGTTGTCAATGGGAAGAGCTCACAACCGAAAAGACGAGCCGAGGACGTGACGGTGGAAGAAGGTACGAGGGACGATAAAGTTGCACCGATGTCGTCGGTCAACAACAACTCGAGGAAGCGACCCCAAAGTTCAGTTGATGTCGAAAAGATGAAAAGGAGCCTGAGGGCACGGAAGAGCTCAAAGATTGCTTCAACTAGCTGCAATGAAGAGGATCGCATTGTTAATCCCAATGGACAGTGCACAAGCAGTTTCAGCTCTGAGGATGACTGTAATGAACCTCAAGAAATCAATGGTGGAATCACTTCTAGCTCAACCTCAAATGGAAAGCCAAGAGCTAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGATTGAGAATCTTACAAAGCCTTGTCCCGAACGGCACAAAGGTTGATATCAGTACAATGCTTGAAGAGGCTGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCCGATGATTTATGGATGTATGCACCGATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTGATGAAGCAAGACAATGCATCACAGTAG | 1092 | 43.41 | MESIGAISEREWISLSGAYTAEESDFMANLLNNYCLPNELNSDLSLEIPSAYWVSNEPPPSLTMAAMDEPSYYSSDASDSSNMYALPQANNNNHPYTVTDSHPLWLPNNGASLSLDFSMEDVRNANCLDEDNGSNIRKTRQCRLQHSPADPTDPAATLVVVNGKSSQPKRRAEDVTVEEGTRDDKVAPMSSVNNNSRKRPQSSVDVEKMKRSLRARKSSKIASTSCNEEDRIVNPNGQCTSSFSSEDDCNEPQEINGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 22880395 | 22882160 | - | CmPI595203_10g018230.1 | Cmu10g1823 | 427353 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g1823 | 363 | SMART | finulus | 281 | 330 | IPR011598 | GO:0046983(InterPro) | |
Cmu10g1823 | 363 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 275 | 340 | IPR036638 | GO:0046983(InterPro) | |
Cmu10g1823 | 363 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 92 | 347 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cmu10g1823 | 363 | CDD | bHLH_AtIND_like | 276 | 338 | - | - | |
Cmu10g1823 | 363 | Gene3D | - | 277 | 333 | IPR036638 | GO:0046983(InterPro) | |
Cmu10g1823 | 363 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 275 | 324 | IPR011598 | GO:0046983(InterPro) | |
Cmu10g1823 | 363 | MobiDBLite | consensus disorder prediction | 142 | 286 | - | - | |
Cmu10g1823 | 363 | MobiDBLite | consensus disorder prediction | 167 | 185 | - | - | |
Cmu10g1823 | 363 | MobiDBLite | consensus disorder prediction | 218 | 279 | - | - | |
Cmu10g1823 | 363 | Pfam | Helix-loop-helix DNA-binding domain | 285 | 325 | IPR011598 | GO:0046983(InterPro) | |
Cmu10g1823 | 363 | FunFam | Basic helix-loop-helix transcription factor | 276 | 333 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu03g1460 | Cmu-Chr3:10444913 | Cmu10g1823 | Cmu-Chr10:22880395 | 2.10E-18 | dispersed | |
Cmu05g2113 | Cmu-Chr5:30658726 | Cmu10g1823 | Cmu-Chr10:22880395 | 1.60E-38 | dispersed | |
Cmu08g1581 | Cmu-Chr8:27534667 | Cmu10g1823 | Cmu-Chr10:22880395 | 1.70E-37 | dispersed | |
Cmu09g0035 | Cmu-Chr9:654110 | Cmu10g1823 | Cmu-Chr10:22880395 | 1.00E-12 | dispersed | |
Cmu10g1823 | Cmu-Chr10:22880395 | Cmu11g1657 | Cmu-Chr11:28819993 | 1.90E-08 | dispersed | |
Cmu10g1823 | Cmu-Chr10:22880395 | Cmu02g0719 | Cmu-Chr2:7388562 | 1.10E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6980 | PF00010 | HLH | 7.70E-09 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g1823 | - | - | - | 0.0 |