Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1823 ATGGAATCTATAGGAGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCTTATACTGCTGAAGAGTCTGATTTCATGGCTAATTTGCTCAACAATTATTGTCTTCCAAATGAGCTAAATTCAGATTTAAGCTTGGAAATTCCATCTGCTTATTGGGTTTCTAATGAACCACCACCATCATTGACCATGGCAGCCATGGACGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATGTATGCCCTTCCACAAGCCAACAACAATAATCATCCTTACACTGTCACTGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCTTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCCGGAATGCTAATTGCTTGGACGAAGATAACGGTTCGAATATCCGAAAAACAAGACAATGCAGGCTACAACACTCCCCTGCTGACCCTACTGACCCTGCTGCTACACTTGTTGTTGTCAATGGGAAGAGCTCACAACCGAAAAGACGAGCCGAGGACGTGACGGTGGAAGAAGGTACGAGGGACGATAAAGTTGCACCGATGTCGTCGGTCAACAACAACTCGAGGAAGCGACCCCAAAGTTCAGTTGATGTCGAAAAGATGAAAAGGAGCCTGAGGGCACGGAAGAGCTCAAAGATTGCTTCAACTAGCTGCAATGAAGAGGATCGCATTGTTAATCCCAATGGACAGTGCACAAGCAGTTTCAGCTCTGAGGATGACTGTAATGAACCTCAAGAAATCAATGGTGGAATCACTTCTAGCTCAACCTCAAATGGAAAGCCAAGAGCTAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGATTGAGAATCTTACAAAGCCTTGTCCCGAACGGCACAAAGGTTGATATCAGTACAATGCTTGAAGAGGCTGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCCGATGATTTATGGATGTATGCACCGATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTGATGAAGCAAGACAATGCATCACAGTAG 1092 43.41 MESIGAISEREWISLSGAYTAEESDFMANLLNNYCLPNELNSDLSLEIPSAYWVSNEPPPSLTMAAMDEPSYYSSDASDSSNMYALPQANNNNHPYTVTDSHPLWLPNNGASLSLDFSMEDVRNANCLDEDNGSNIRKTRQCRLQHSPADPTDPAATLVVVNGKSSQPKRRAEDVTVEEGTRDDKVAPMSSVNNNSRKRPQSSVDVEKMKRSLRARKSSKIASTSCNEEDRIVNPNGQCTSSFSSEDDCNEPQEINGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22880395 22882160 - CmPI595203_10g018230.1 Cmu10g1823 427353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1823 363 SMART finulus 281 330 IPR011598 GO:0046983(InterPro)
Cmu10g1823 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 340 IPR036638 GO:0046983(InterPro)
Cmu10g1823 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 92 347 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cmu10g1823 363 CDD bHLH_AtIND_like 276 338 - -
Cmu10g1823 363 Gene3D - 277 333 IPR036638 GO:0046983(InterPro)
Cmu10g1823 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983(InterPro)
Cmu10g1823 363 MobiDBLite consensus disorder prediction 142 286 - -
Cmu10g1823 363 MobiDBLite consensus disorder prediction 167 185 - -
Cmu10g1823 363 MobiDBLite consensus disorder prediction 218 279 - -
Cmu10g1823 363 Pfam Helix-loop-helix DNA-binding domain 285 325 IPR011598 GO:0046983(InterPro)
Cmu10g1823 363 FunFam Basic helix-loop-helix transcription factor 276 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1460 Cmu-Chr3:10444913 Cmu10g1823 Cmu-Chr10:22880395 2.10E-18 dispersed
Cmu05g2113 Cmu-Chr5:30658726 Cmu10g1823 Cmu-Chr10:22880395 1.60E-38 dispersed
Cmu08g1581 Cmu-Chr8:27534667 Cmu10g1823 Cmu-Chr10:22880395 1.70E-37 dispersed
Cmu09g0035 Cmu-Chr9:654110 Cmu10g1823 Cmu-Chr10:22880395 1.00E-12 dispersed
Cmu10g1823 Cmu-Chr10:22880395 Cmu11g1657 Cmu-Chr11:28819993 1.90E-08 dispersed
Cmu10g1823 Cmu-Chr10:22880395 Cmu02g0719 Cmu-Chr2:7388562 1.10E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6980 PF00010 HLH 7.70E-09 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1823 - - - 0.0