Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1951 ATGGCAGCCATGGCTCTTTCATCTACATTCACAGGAAAAGCTGTTCCTTTGAATGCACCGACCGAGCTCTCATCCTTGGTTCGCAGCAATGGTAGAGTCTCAATGAGAAGATCTGGAAAGCCAGCGGCTTCCTCAGGCAGCCCATGGTATGGTCCGGACCGTGTCAAGTACCTTGGACCATTCTCTGGTGAGCCTCCATCTTACCTCACAGGAGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGTCTATCTGCCGATCCTGAGACCTTTGCCAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGGGCTCTAGGATGTGTATTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGTGAGGGTGGCCTAGACTATCTTGGAAACCCAAGTCTTATACATGCACAGAGTATTTTGGCCATTTGGGCATCTCAAGTAGTGCTAATGGGTGCAGTTGAAGGTTACCGTATTGCTGGAGGACCACTCGGAGAAATTACCGATCCCATCTACCCAGGCGGTAGCTTTGATCCCCTCGGACTGGCTGATGATCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAATGGCCGTCTTGCAATGTTTTCCATGTTCGGGTTTTTTGTACAAGCCATTGTAACAGGAAAGGGTCCTTTGGAGAACCTCGCAGATCATCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACCAACTTTGTACCTGGGAAGTGA 798 49.0 MAAMALSSTFTGKAVPLNAPTELSSLVRSNGRVSMRRSGKPAASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25095395 25096192 - CmPI595203_10g019510.1 Cmu10g1951 427481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1951 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cmu10g1951 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cmu10g1951 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cmu10g1951 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Cmu10g1951 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1834 Cmu-Chr2:32255880 Cmu10g1951 Cmu-Chr10:25095395 3.60E-134 dispersed
Cmu03g1291 Cmu-Chr3:7983741 Cmu10g1951 Cmu-Chr10:25095395 1.50E-62 dispersed
Cmu08g0181 Cmu-Chr8:3890002 Cmu10g1951 Cmu-Chr10:25095395 8.20E-56 dispersed
Cmu10g1951 Cmu-Chr10:25095395 Cmu11g1896 Cmu-Chr11:30955298 2.50E-42 dispersed
Cmu10g1951 Cmu-Chr10:25095395 Cmu01g2379 Cmu-Chr1:35827536 5.00E-136 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1951 K08912 - csv:101203342 528.865