Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g1986 | ATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAAGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCCAGTGCTGGCATGAAGCATACTCTTGCAAGATACAACAAATGTGTAGAATCTTCAGAGGCTACAGTAGACGTGCACAAGGTCGAGAAGCAAGAGCATGAGGAAGTAGACATTCTAAGAGACGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACTGGCTTAGGCTTCAAAGAGTTGCAGAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGTACAGGAACAACGAGCAATGCTTGAGAACGAAACTCTACGTAGACAGGTCAGTGAGCTTCGGTGTCTGTTTCCGCCGGTTGATTGTCCGCTGCCTGCTTATCTTGAATACTGCTCCCTAGAGCAGAAGAACATTGGCATTAGAAGCCCTGATATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGGGTGAGAGAGACACTCATTCAAATGATTCAGGGAGCCAAATGGGCCTACTATGA | 756 | 44.18 | MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSAGMKHTLARYNKCVESSEATVDVHKVEKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVSELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSPDMACNSEIERGDSDTTLHLGLPSHVYCKRKEGERDTHSNDSGSQMGLL | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 25546374 | 25550350 | + | CmPI595203_10g019860.1 | Cmu10g1986 | 427516 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g1986 | 251 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 205 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cmu10g1986 | 251 | Coils | Coil | 123 | 143 | - | - | |
Cmu10g1986 | 251 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cmu10g1986 | 251 | Gene3D | - | 14 | 93 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu10g1986 | 251 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu10g1986 | 251 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu10g1986 | 251 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu10g1986 | 251 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu10g1986 | 251 | FunFam | MADS-box transcription factor MADS-MC | 13 | 86 | - | - | |
Cmu10g1986 | 251 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu10g1986 | 251 | SUPERFAMILY | SRF-like | 2 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu10g1986 | 251 | Coils | Coil | 149 | 169 | - | - | |
Cmu10g1986 | 251 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu10g1986 | 251 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cmu10g1986 | 251 | Pfam | K-box region | 85 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cmu10g1986 | 251 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu04g0424 | Cmu-Chr4:13984727 | Cmu10g1986 | Cmu-Chr10:25546374 | 1.70E-32 | dispersed | |
Cmu10g1986 | Cmu-Chr10:25546374 | Cmu11g1474 | Cmu-Chr11:27042685 | 1.60E-19 | dispersed | |
Cmu10g1986 | Cmu-Chr10:25546374 | Cmu01g2353 | Cmu-Chr1:35604554 | 1.20E-25 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6989 | PF01486 | K-box | 2.20E-17 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g1986 | - | - | - | 0.0 |